1hhv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1hhv" [edit=sysop:move=sysop])
Current revision (06:42, 30 October 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1hhv.png|left|200px]]
 
-
{{STRUCTURE_1hhv| PDB=1hhv | SCENE= }}
+
==SOLUTION STRUCTURE OF VIRUS CHEMOKINE VMIP-II==
 +
<StructureSection load='1hhv' size='340' side='right'caption='[[1hhv]]' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1hhv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_herpesvirus_8_strain_GK18 Human herpesvirus 8 strain GK18]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HHV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HHV FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 25 models</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hhv OCA], [https://pdbe.org/1hhv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hhv RCSB], [https://www.ebi.ac.uk/pdbsum/1hhv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hhv ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/VMI2_HHV8P VMI2_HHV8P] Blocks infection by several different human immunodeficiency virus type 1 (HIV-1) strains. This occurs because vMIP-II binds to a wide range of chemokine receptors. May form part of the response to host defenses contributing to virus-induced neoplasia and may have relevance to KSHV and HIV-I interactions.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hh/1hhv_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hhv ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Human herpesvirus-8 (HHV-8) is the infectious agent responsible for Kaposi's sarcoma and encodes a protein, macrophage inflammatory protein-II (vMIP-II), which shows sequence similarity to the human CC chemokines. vMIP-II has broad receptor specificity that crosses chemokine receptor subfamilies, and inhibits HIV-1 viral entry mediated by numerous chemokine receptors. In this study, the solution structure of chemically synthesized vMIP-II was determined by nuclear magnetic resonance. The protein is a monomer and possesses the chemokine fold consisting of a flexible N-terminus, three antiparallel beta strands, and a C-terminal alpha helix. Except for the N-terminal residues (residues 1-13) and the last two C-terminal residues (residues 73-74), the structure of vMIP-II is well-defined, exhibiting average rmsd of 0.35 and 0.90 A for the backbone heavy atoms and all heavy atoms of residues 14-72, respectively. Taking into account the sequence differences between the various CC chemokines and comparing their three-dimensional structures allows us to implicate residues that influence the quaternary structure and receptor binding and activation of these proteins in solution. The analysis of the sequence and three-dimensional structure of vMIP-II indicates the presence of epitopes involved in binding two receptors CCR2 and CCR5. We propose that vMIP-II was initially specific for CCR5 and acquired receptor-binding properties to CCR2 and other chemokine receptors.
-
===SOLUTION STRUCTURE OF VIRUS CHEMOKINE VMIP-II===
+
CCR2 and CCR5 receptor-binding properties of herpesvirus-8 vMIP-II based on sequence analysis and its solution structure.,Shao W, Fernandez E, Sachpatzidis A, Wilken J, Thompson DA, Schweitzer BI, Lolis E Eur J Biochem. 2001 May;268(10):2948-59. PMID:11358512<ref>PMID:11358512</ref>
-
{{ABSTRACT_PUBMED_11358512}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 1hhv" style="background-color:#fffaf0;"></div>
-
[[1hhv]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HHV OCA].
+
== References ==
-
 
+
<references/>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:011358512</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Fernandez, E.]]
+
[[Category: Human herpesvirus 8 strain GK18]]
-
[[Category: Lolis, E.]]
+
[[Category: Large Structures]]
-
[[Category: Navenot, J M.]]
+
[[Category: Fernandez E]]
-
[[Category: Pepiper, S.]]
+
[[Category: Lolis E]]
-
[[Category: Schweitzer, B I.]]
+
[[Category: Navenot JM]]
-
[[Category: Shao, W.]]
+
[[Category: Pepiper S]]
-
[[Category: Thompson, D A.]]
+
[[Category: Schweitzer BI]]
-
[[Category: Wilken, J.]]
+
[[Category: Shao W]]
-
[[Category: Receptor binding]]
+
[[Category: Thompson DA]]
-
[[Category: Viral protein]]
+
[[Category: Wilken J]]
-
[[Category: Virus chemokine]]
+
-
[[Category: Vmip-ii]]
+

Current revision

SOLUTION STRUCTURE OF VIRUS CHEMOKINE VMIP-II

PDB ID 1hhv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools