This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1gxu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1gxu" [edit=sysop:move=sysop])
Current revision (11:25, 27 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1gxu.png|left|200px]]
 
-
{{STRUCTURE_1gxu| PDB=1gxu | SCENE= }}
+
==Hydrogenase Maturation Protein HypF "acylphosphatase-like" N-terminal domain (HypF-ACP) in complex with a substrate. Crystal grown in the presence of carbamoylphosphate==
 +
<StructureSection load='1gxu' size='340' side='right'caption='[[1gxu]], [[Resolution|resolution]] 1.27&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1gxu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GXU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GXU FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.27&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2HP:DIHYDROGENPHOSPHATE+ION'>2HP</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gxu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gxu OCA], [https://pdbe.org/1gxu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gxu RCSB], [https://www.ebi.ac.uk/pdbsum/1gxu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gxu ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HYPF_ECOLI HYPF_ECOLI] Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.<ref>PMID:8661925</ref> <ref>PMID:12377778</ref> <ref>PMID:15291820</ref> <ref>PMID:15504408</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gx/1gxu_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gxu ConSurf].
 +
<div style="clear:both"></div>
-
===HYDROGENASE MATURATION PROTEIN HYPF "ACYLPHOSPHATASE-LIKE" N-TERMINAL DOMAIN (HYPF-ACP) IN COMPLEX WITH A SUBSTRATE. CRYSTAL GROWN IN THE PRESENCE OF CARBAMOYLPHOSPHATE===
+
==See Also==
-
 
+
*[[HypA%2C HypB%2C HypC%2C HypD%2C HypE and HypF 3D structures|HypA%2C HypB%2C HypC%2C HypD%2C HypE and HypF 3D structures]]
-
{{ABSTRACT_PUBMED_12206761}}
+
== References ==
-
 
+
<references/>
-
==About this Structure==
+
__TOC__
-
[[1gxu]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GXU OCA].
+
</StructureSection>
-
 
+
[[Category: Escherichia coli]]
-
==Reference==
+
[[Category: Large Structures]]
-
<ref group="xtra">PMID:012206761</ref><references group="xtra"/>
+
[[Category: Bolognesi M]]
-
[[Category: Bolognesi, M.]]
+
[[Category: Bucciantini M]]
-
[[Category: Bucciantini, M.]]
+
[[Category: Ramponi G]]
-
[[Category: Ramponi, G.]]
+
[[Category: Rosano C]]
-
[[Category: Rosano, C.]]
+
[[Category: Stefani M]]
-
[[Category: Stefani, M.]]
+
[[Category: Zuccotti S]]
-
[[Category: Zuccotti, S.]]
+
-
[[Category: Acylphosphatase]]
+
-
[[Category: Fibril formation]]
+
-
[[Category: Hydrogenase maturation]]
+
-
[[Category: Phosphatase]]
+
-
[[Category: Zinc-finger]]
+

Current revision

Hydrogenase Maturation Protein HypF "acylphosphatase-like" N-terminal domain (HypF-ACP) in complex with a substrate. Crystal grown in the presence of carbamoylphosphate

PDB ID 1gxu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools