1irh

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[[Image:1irh.png|left|200px]]
 
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{{STRUCTURE_1irh| PDB=1irh | SCENE= }}
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==The Solution Structure of The Third Kunitz Domain of Tissue Factor Pathway Inhibitor==
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<StructureSection load='1irh' size='340' side='right'caption='[[1irh]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1irh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IRH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IRH FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1irh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1irh OCA], [https://pdbe.org/1irh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1irh RCSB], [https://www.ebi.ac.uk/pdbsum/1irh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1irh ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TFPI1_HUMAN TFPI1_HUMAN] Inhibits factor X (X(a)) directly and, in a Xa-dependent way, inhibits VIIa/tissue factor activity, presumably by forming a quaternary Xa/LACI/VIIa/TF complex. It possesses an antithrombotic action and also the ability to associate with lipoproteins in plasma.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ir/1irh_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1irh ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Tissue factor pathway inhibitor (TFPI) inhibits the activity of coagulation factor VIIa and Xa through its K1 and K2 domain, respectively, and the inhibitory activity is enhanced by heparin. The function of the K3 domain of TFPI has not been established, but the domain probably harbors a heparin binding site (HBS-2). We determined the three-dimensional solution structure of the TFPI K3 domain (Glu182-Gly242) by heteronuclear multidimensional NMR. The results showed that the molecule is composed of one antiparallel beta-sheet and one alpha-helix, and in overall structure is very similar to the K2 domain, with the rms deviation of 1.55 A for the 58 defined C(alpha) positions. However, the surface electrostatic properties of both domains are different each other. The lack of inhibitory activity of the K3 domain is explained by the absence of electrostatic interaction with factor Xa over a large surface area. A titration experiment with size-fractionated heparin showed that a heparin binding site was located in the vicinity of the alpha-helix. In this region, a positively charged cluster is formed by Lys213, Lys232, and Lys240, and the negatively charged sulfate groups of heparin bind there. The enhancement of inhibitory activity by heparin probably was not due to a conformational change to TFPI itself. It is likely that heparin simply increases the local concentration of TFPI on the cell surface and stabilizes the initial complex that forms.
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===The Solution Structure of The Third Kunitz Domain of Tissue Factor Pathway Inhibitor===
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Structural mechanism for heparin-binding of the third Kunitz domain of human tissue factor pathway inhibitor.,Mine S, Yamazaki T, Miyata T, Hara S, Kato H Biochemistry. 2002 Jan 8;41(1):78-85. PMID:11772005<ref>PMID:11772005</ref>
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{{ABSTRACT_PUBMED_11772005}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1irh" style="background-color:#fffaf0;"></div>
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==About this Structure==
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==See Also==
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[[1irh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IRH OCA].
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*[[Tissue factor pathway inhibitor|Tissue factor pathway inhibitor]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:011772005</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Hara, S.]]
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[[Category: Large Structures]]
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[[Category: Kato, H.]]
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[[Category: Hara S]]
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[[Category: Mine, S.]]
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[[Category: Kato H]]
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[[Category: Miyata, T.]]
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[[Category: Mine S]]
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[[Category: Yamazaki, T.]]
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[[Category: Miyata T]]
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[[Category: Kunitz domain]]
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[[Category: Yamazaki T]]
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[[Category: Non-protease inhibitor]]
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[[Category: Protein binding]]
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Current revision

The Solution Structure of The Third Kunitz Domain of Tissue Factor Pathway Inhibitor

PDB ID 1irh

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