4amc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:30, 20 December 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:4amc.png|left|200px]]
 
-
{{STRUCTURE_4amc| PDB=4amc | SCENE= }}
+
==Crystal structure of Lactobacillus reuteri 121 N-terminally truncated glucansucrase GTFA==
 +
<StructureSection load='4amc' size='340' side='right'caption='[[4amc]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4amc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Limosilactobacillus_reuteri Limosilactobacillus reuteri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AMC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AMC FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4amc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4amc OCA], [https://pdbe.org/4amc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4amc RCSB], [https://www.ebi.ac.uk/pdbsum/4amc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4amc ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5SBL9_LIMRT Q5SBL9_LIMRT] Production of extracellular glucans, that are thought to play a key role in the development of the dental plaque because of their ability to adhere to smooth surfaces and mediate the aggregation of bacterial cells and food debris.[ARBA:ARBA00003243]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The reuteransucrase GTFA from Lactobacillus reuteri 121, which belongs to glycosyl hydrolase family GH70, synthesizes branched alpha-glucans with both alpha-1,6- and alpha-1,4-glycosidic linkages (reuteran) from sucrose. The crystal structure of GTFA-DeltaN, a 118 kDa fragment of GTFA comprising residues 745-1763 and including the catalytic domain, was determined at 3.6 A resolution by molecular replacement. The crystals have large solvent channels and an unusually high solvent content of 85%. GTFA-DeltaN has the same domain arrangement and domain topologies as observed in previously determined GH70 glucansucrase structures. The architecture of the GTFA-DeltaN active site and binding pocket confirms that glucansucrases have a conserved substrate specificity for sucrose. However, this first crystal structure of an alpha-1,6/alpha-1,4-specific glucansucrase shows that residues from conserved sequence motif IV (1128-1136 in GTFA-DeltaN) contribute to the acceptor-binding subsites and that they display differences compared with other structurally characterized glucansucrases. In particular, the structure clarifies the importance of residues following the transition-state stabilizer for product specificity, and especially residue Asn1134, which is in a position to interact with sugar units in acceptor subsite +2.
-
===Crystal structure of Lactobacillus reuteri 121 N-terminally truncated glucansucrase GTFA===
+
Structure of the alpha-1,6/alpha-1,4-specific glucansucrase GTFA from Lactobacillus reuteri 121.,Pijning T, Vujicic-Zagar A, Kralj S, Dijkhuizen L, Dijkstra BW Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Dec 1;68(Pt 12):1448-54., doi: 10.1107/S1744309112044168. Epub 2012 Nov 14. PMID:23192022<ref>PMID:23192022</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
==About this Structure==
+
</div>
-
[[4amc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_reuteri Lactobacillus reuteri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AMC OCA].
+
<div class="pdbe-citations 4amc" style="background-color:#fffaf0;"></div>
-
[[Category: Dextransucrase]]
+
== References ==
-
[[Category: Lactobacillus reuteri]]
+
<references/>
-
[[Category: Dijkhuizen, L.]]
+
__TOC__
-
[[Category: Dijkstra, B W.]]
+
</StructureSection>
-
[[Category: Kralj, S.]]
+
[[Category: Large Structures]]
-
[[Category: Pijning, T.]]
+
[[Category: Limosilactobacillus reuteri]]
-
[[Category: Vujicic-Zagar, A.]]
+
[[Category: Dijkhuizen L]]
-
[[Category: Glycosyltransferase]]
+
[[Category: Dijkstra BW]]
-
[[Category: Reuteransucrase]]
+
[[Category: Kralj S]]
-
[[Category: Transferase]]
+
[[Category: Pijning T]]
 +
[[Category: Vujicic-Zagar A]]

Current revision

Crystal structure of Lactobacillus reuteri 121 N-terminally truncated glucansucrase GTFA

PDB ID 4amc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools