This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1jya

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1jya" [edit=sysop:move=sysop])
Current revision (07:56, 3 April 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1jya.png|left|200px]]
 
-
{{STRUCTURE_1jya| PDB=1jya | SCENE= }}
+
==Crystal Structure of SycE==
-
 
+
<StructureSection load='1jya' size='340' side='right'caption='[[1jya]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
-
===Crystal Structure of SycE===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1jya]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pseudotuberculosis Yersinia pseudotuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JYA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JYA FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_11685245}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.74&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jya OCA], [https://pdbe.org/1jya PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jya RCSB], [https://www.ebi.ac.uk/pdbsum/1jya PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jya ProSAT]</span></td></tr>
-
[[1jya]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pseudotuberculosis Yersinia pseudotuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JYA OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/Q663P0_YERPS Q663P0_YERPS] Positive regulator of YopE.[PIRNR:PIRNR011271]
-
<ref group="xtra">PMID:011685245</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jy/1jya_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jya ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Yersinia pseudotuberculosis]]
[[Category: Yersinia pseudotuberculosis]]
-
[[Category: Birtalan, S.]]
+
[[Category: Birtalan S]]
-
[[Category: Ghosh, P.]]
+
[[Category: Ghosh P]]
-
[[Category: Chaperone]]
+
-
[[Category: Specific chaperone]]
+
-
[[Category: Type iii secretion]]
+

Current revision

Crystal Structure of SycE

PDB ID 1jya

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1jya"
Personal tools