1j98
From Proteopedia
(Difference between revisions)
(8 intermediate revisions not shown.) | |||
Line 1: | Line 1: | ||
- | [[Image:1j98.png|left|200px]] | ||
- | + | ==The 1.2 Angstrom Structure of Bacillus subtilis LuxS== | |
- | + | <StructureSection load='1j98' size='340' side='right'caption='[[1j98]], [[Resolution|resolution]] 1.20Å' scene=''> | |
- | + | == Structural highlights == | |
- | + | <table><tr><td colspan='2'>[[1j98]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J98 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J98 FirstGlance]. <br> | |
- | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2Å</td></tr> | |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
- | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j98 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j98 OCA], [https://pdbe.org/1j98 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j98 RCSB], [https://www.ebi.ac.uk/pdbsum/1j98 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j98 ProSAT]</span></td></tr> |
- | [[1j98]] is a 1 chain structure with sequence from [ | + | </table> |
- | + | == Function == | |
- | == | + | [https://www.uniprot.org/uniprot/LUXS_BACSU LUXS_BACSU] Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD).[HAMAP-Rule:MF_00091] |
- | < | + | == Evolutionary Conservation == |
+ | [[Image:Consurf_key_small.gif|200px|right]] | ||
+ | Check<jmol> | ||
+ | <jmolCheckbox> | ||
+ | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j9/1j98_consurf.spt"</scriptWhenChecked> | ||
+ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
+ | <text>to colour the structure by Evolutionary Conservation</text> | ||
+ | </jmolCheckbox> | ||
+ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j98 ConSurf]. | ||
+ | <div style="clear:both"></div> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
[[Category: Bacillus subtilis]] | [[Category: Bacillus subtilis]] | ||
- | [[Category: Baker | + | [[Category: Large Structures]] |
- | [[Category: Blackburn | + | [[Category: Baker PJ]] |
- | [[Category: Cox | + | [[Category: Blackburn GM]] |
- | [[Category: Das | + | [[Category: Cox AG]] |
- | [[Category: Foster | + | [[Category: Das SK]] |
- | [[Category: Hartley | + | [[Category: Foster SJ]] |
- | [[Category: Horsburgh | + | [[Category: Hartley A]] |
- | [[Category: McCleod | + | [[Category: Horsburgh MJ]] |
- | [[Category: Mekhalfia | + | [[Category: McCleod CW]] |
- | [[Category: Rice | + | [[Category: Mekhalfia A]] |
- | [[Category: Ruzheinikov | + | [[Category: Rice DW]] |
- | [[Category: Sedelnikova | + | [[Category: Ruzheinikov SN]] |
- | + | [[Category: Sedelnikova SE]] | |
- | + |
Current revision
The 1.2 Angstrom Structure of Bacillus subtilis LuxS
|
Categories: Bacillus subtilis | Large Structures | Baker PJ | Blackburn GM | Cox AG | Das SK | Foster SJ | Hartley A | Horsburgh MJ | McCleod CW | Mekhalfia A | Rice DW | Ruzheinikov SN | Sedelnikova SE