1nqz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1nqz" [edit=sysop:move=sysop])
Current revision (09:24, 16 August 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1nqz.png|left|200px]]
 
-
{{STRUCTURE_1nqz| PDB=1nqz | SCENE= }}
+
==The structure of a CoA pyrophosphatase from D. Radiodurans complexed with a magnesium ion==
 +
<StructureSection load='1nqz' size='340' side='right'caption='[[1nqz]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1nqz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NQZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NQZ FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nqz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nqz OCA], [https://pdbe.org/1nqz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nqz RCSB], [https://www.ebi.ac.uk/pdbsum/1nqz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nqz ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Y1184_DEIRA Y1184_DEIRA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nq/1nqz_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nqz ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Gene Dr1184 from Deinococcus radiodurans codes for a Nudix enzyme (DR-CoAse) that hydrolyzes the pyrophosphate moiety of coenzyme A (CoA). Nudix enzymes with the same specificity have been found in yeast, humans, and mice. The three-dimensional structure of DR-CoAse, the first of a Nudix hydrolase with this specificity, reveals that this enzyme contains, in addition to the fold observed in other Nudix enzymes, insertions that are characteristic of a CoA-hydrolyzing Nudix subfamily. The structure of the complex of the enzyme with Mg(2+), its activating cation, reveals the position of the catalytic site. A helix, part of the N-terminal insertion, partially occludes the binding site and has to change its position to permit substrate binding. Comparison of the structure of DR-CoAse to those of other Nudix enzymes, together with the location in the structure of the sequence characteristic of CoAses, suggests a mode of binding of the substrate to the enzyme that is compatible with all available data.
-
===The structure of a CoA pyrophosphatase from D. Radiodurans complexed with a magnesium ion===
+
Structure of a coenzyme A pyrophosphatase from Deinococcus radiodurans: a member of the Nudix family.,Kang LW, Gabelli SB, Bianchet MA, Xu WL, Bessman MJ, Amzel LM J Bacteriol. 2003 Jul;185(14):4110-8. PMID:12837785<ref>PMID:12837785</ref>
-
{{ABSTRACT_PUBMED_12837785}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 1nqz" style="background-color:#fffaf0;"></div>
-
[[1nqz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NQZ OCA].
+
== References ==
-
 
+
<references/>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:012837785</ref><references group="xtra"/>
+
</StructureSection>
[[Category: Deinococcus radiodurans]]
[[Category: Deinococcus radiodurans]]
-
[[Category: Nucleotide diphosphatase]]
+
[[Category: Large Structures]]
-
[[Category: Amzel, L M.]]
+
[[Category: Amzel LM]]
-
[[Category: Bessman, M J.]]
+
[[Category: Bessman MJ]]
-
[[Category: Bianchet, M A.]]
+
[[Category: Bianchet MA]]
-
[[Category: Gabelli, S B.]]
+
[[Category: Gabelli SB]]
-
[[Category: Kang, L W.]]
+
[[Category: Kang LW]]
-
[[Category: Xu, W L.]]
+
[[Category: Xu WL]]
-
[[Category: Coa]]
+
-
[[Category: D radioduran]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Mutt]]
+
-
[[Category: Nudix]]
+
-
[[Category: Pyrophosphatase]]
+

Current revision

The structure of a CoA pyrophosphatase from D. Radiodurans complexed with a magnesium ion

PDB ID 1nqz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools