1nf9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:55, 14 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1nf9.png|left|200px]]
 
-
{{STRUCTURE_1nf9| PDB=1nf9 | SCENE= }}
+
==Crystal Structure of PhzD protein from Pseudomonas aeruginosa==
-
 
+
<StructureSection load='1nf9' size='340' side='right'caption='[[1nf9]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
===Crystal Structure of PhzD protein from Pseudomonas aeruginosa===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1nf9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NF9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NF9 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_12741825}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nf9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nf9 OCA], [https://pdbe.org/1nf9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nf9 RCSB], [https://www.ebi.ac.uk/pdbsum/1nf9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nf9 ProSAT]</span></td></tr>
-
[[1nf9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NF9 OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/PHZD1_PSEAE PHZD1_PSEAE] Involved in the biosynthesis of the antibiotic phenazine, a nitrogen-containing heterocyclic molecule. PhzD1 (operon phzA1B1C1E1F1G1) has a role in the biosynthesis of the phenazine during planktonic growth (PubMed:23129634). Catalyzes the hydrolysis of the vinyl ether functional group of 2-amino-2-deoxyisochorismate (ADIC), yielding pyruvate and trans-2,3-dihydro-3-hydroxyanthranilic acid (DHHA) (PubMed:12741825, PubMed:23129634). Also able to act on isochorismate, chorismate and 4-amino-4-deoxychorismate (ADC) as substrates (PubMed:12741825).<ref>PMID:12741825</ref> <ref>PMID:23129634</ref> <ref>PMID:11591691</ref>
-
<ref group="xtra">PMID:012741825</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
-
[[Category: Isochorismatase]]
+
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nf/1nf9_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nf9 ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Calabrese, K.]]
+
[[Category: Calabrese K]]
-
[[Category: Eisenstein, E.]]
+
[[Category: Eisenstein E]]
-
[[Category: Ladner, J E.]]
+
[[Category: Ladner JE]]
-
[[Category: Parsons, F.]]
+
[[Category: Parsons F]]
-
[[Category: Enzyme]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Isochorismatase]]
+
-
[[Category: Phenazine pathway]]
+

Current revision

Crystal Structure of PhzD protein from Pseudomonas aeruginosa

PDB ID 1nf9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools