This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1nt2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1nt2" [edit=sysop:move=sysop])
Current revision (07:59, 14 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1nt2.png|left|200px]]
 
-
{{STRUCTURE_1nt2| PDB=1nt2 | SCENE= }}
+
==CRYSTAL STRUCTURE OF FIBRILLARIN/NOP5P COMPLEX==
-
 
+
<StructureSection load='1nt2' size='340' side='right'caption='[[1nt2]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
===CRYSTAL STRUCTURE OF FIBRILLARIN/NOP5P COMPLEX===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1nt2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_DSM_4304 Archaeoglobus fulgidus DSM 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NT2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NT2 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_12598892}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nt2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nt2 OCA], [https://pdbe.org/1nt2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nt2 RCSB], [https://www.ebi.ac.uk/pdbsum/1nt2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nt2 ProSAT]</span></td></tr>
-
[[1nt2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NT2 OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/FLPA_ARCFU FLPA_ARCFU] Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA.<ref>PMID:15286083</ref>
-
<ref group="xtra">PMID:012598892</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
-
[[Category: Archaeoglobus fulgidus]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Aittaleb, M.]]
+
Check<jmol>
-
[[Category: Chen, Q.]]
+
<jmolCheckbox>
-
[[Category: Daniels, C J.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nt/1nt2_consurf.spt"</scriptWhenChecked>
-
[[Category: Li, H.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Palmer, J R.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Rashid, R.]]
+
</jmolCheckbox>
-
[[Category: Ademet]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nt2 ConSurf].
-
[[Category: Binding motif]]
+
<div style="clear:both"></div>
-
[[Category: Rna binding protein]]
+
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Archaeoglobus fulgidus DSM 4304]]
 +
[[Category: Large Structures]]
 +
[[Category: Aittaleb M]]
 +
[[Category: Chen Q]]
 +
[[Category: Daniels CJ]]
 +
[[Category: Li H]]
 +
[[Category: Palmer JR]]
 +
[[Category: Rashid R]]

Current revision

CRYSTAL STRUCTURE OF FIBRILLARIN/NOP5P COMPLEX

PDB ID 1nt2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools