This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1k7j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:58, 3 April 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1k7j.png|left|200px]]
 
-
{{STRUCTURE_1k7j| PDB=1k7j | SCENE= }}
+
==Structural Genomics, protein TF1==
-
 
+
<StructureSection load='1k7j' size='340' side='right'caption='[[1k7j]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
===Structural Genomics, protein TF1===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1k7j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K7J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K7J FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[1k7j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K7J OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k7j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k7j OCA], [https://pdbe.org/1k7j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k7j RCSB], [https://www.ebi.ac.uk/pdbsum/1k7j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k7j ProSAT], [https://www.topsan.org/Proteins/MCSG/1k7j TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/YCIO_ECOLI YCIO_ECOLI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k7/1k7j_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k7j ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Dementieva, I.]]
+
[[Category: Large Structures]]
-
[[Category: Donnelly, M.]]
+
[[Category: Dementieva I]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Donnelly M]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Joachimiak A]]
-
[[Category: Thorn, J.]]
+
[[Category: Thorn J]]
-
[[Category: Zhang, R.]]
+
[[Category: Zhang R]]
-
[[Category: Mcsg]]
+
-
[[Category: Midwest center for structural genomic]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Putative translation factor]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Unknown function]]
+
-
[[Category: Ycio]]
+

Current revision

Structural Genomics, protein TF1

PDB ID 1k7j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools