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1l3l
From Proteopedia
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| - | [[Image:1l3l.png|left|200px]] | ||
| - | + | ==Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA== | |
| + | <StructureSection load='1l3l' size='340' side='right'caption='[[1l3l]], [[Resolution|resolution]] 1.66Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[1l3l]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L3L FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.66Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LAE:3-OXO-OCTANOIC+ACID+(2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE'>LAE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l3l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3l OCA], [https://pdbe.org/1l3l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l3l RCSB], [https://www.ebi.ac.uk/pdbsum/1l3l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l3l ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/TRAR_RHIRD TRAR_RHIRD] Positive regulation of conjugal transfer of Ti plasmids. TraR activates target genes in the presence of AAI and also activates traR and traI themselves. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l3/1l3l_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1l3l ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | == | + | ==See Also== |
| - | + | *[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]] | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
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| - | [[ | + | |
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| - | < | + | |
[[Category: Agrobacterium tumefaciens]] | [[Category: Agrobacterium tumefaciens]] | ||
| - | [[Category: Anderson | + | [[Category: Large Structures]] |
| - | [[Category: Bashkin | + | [[Category: Anderson JC]] |
| - | [[Category: Brace | + | [[Category: Bashkin JK]] |
| - | [[Category: Joachimiak | + | [[Category: Brace JL]] |
| - | [[Category: Miller | + | [[Category: Joachimiak A]] |
| - | [[Category: Molyneaux | + | [[Category: Miller PC]] |
| - | [[Category: Oulmassov | + | [[Category: Molyneaux JM]] |
| - | [[Category: Pappas | + | [[Category: Oulmassov T]] |
| - | [[Category: Winans | + | [[Category: Pappas T]] |
| - | [[Category: Zhang | + | [[Category: Winans SC]] |
| - | + | [[Category: Zhang R]] | |
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Current revision
Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA
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