This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1mey

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1mey" [edit=sysop:move=sysop])
Current revision (07:43, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1mey.png|left|200px]]
 
-
{{STRUCTURE_1mey| PDB=1mey | SCENE= }}
+
==CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNA==
-
 
+
<StructureSection load='1mey' size='340' side='right'caption='[[1mey]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
===CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNA===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1mey]] is a 7 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MEY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MEY FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_8901872}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C38:5-IODO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>C38</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mey FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mey OCA], [https://pdbe.org/1mey PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mey RCSB], [https://www.ebi.ac.uk/pdbsum/1mey PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mey ProSAT]</span></td></tr>
-
[[1mey]] is a 7 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MEY OCA].
+
</table>
-
 
+
== Evolutionary Conservation ==
-
==Reference==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<ref group="xtra">PMID:008901872</ref><references group="xtra"/>
+
Check<jmol>
-
[[Category: Berg, J M.]]
+
<jmolCheckbox>
-
[[Category: Kim, C A.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/me/1mey_consurf.spt"</scriptWhenChecked>
-
[[Category: Protein design]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Protein-dna interaction]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Transferase-dna complex]]
+
</jmolCheckbox>
-
[[Category: Zinc finger]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mey ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Berg JM]]
 +
[[Category: Kim CA]]

Current revision

CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNA

PDB ID 1mey

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools