This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1oty

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1oty" [edit=sysop:move=sysop])
Current revision (08:03, 14 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1oty.png|left|200px]]
 
-
{{STRUCTURE_1oty| PDB=1oty | SCENE= }}
+
==Native PNP +ALLO==
 +
<StructureSection load='1oty' size='340' side='right'caption='[[1oty]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1oty]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OTY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OTY FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6MP:6-METHYLPURINE'>6MP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oty FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oty OCA], [https://pdbe.org/1oty PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oty RCSB], [https://www.ebi.ac.uk/pdbsum/1oty PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oty ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DEOD_ECOLI DEOD_ECOLI] Cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules.[HAMAP-Rule:MF_01627]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/1oty_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oty ConSurf].
 +
<div style="clear:both"></div>
-
===Native PNP +ALLO===
+
==See Also==
-
 
+
*[[Purine nucleoside phosphorylase 3D structures|Purine nucleoside phosphorylase 3D structures]]
-
{{ABSTRACT_PUBMED_14700625}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
[[1oty]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OTY OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:014700625</ref><references group="xtra"/>
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Purine-nucleoside phosphorylase]]
+
[[Category: Large Structures]]
-
[[Category: Allan, P W.]]
+
[[Category: Allan PW]]
-
[[Category: Anand, R.]]
+
[[Category: Anand R]]
-
[[Category: Bennett, E M.]]
+
[[Category: Bennett EM]]
-
[[Category: Ealick, S E.]]
+
[[Category: Ealick SE]]
-
[[Category: Hassan, A E.]]
+
[[Category: Hassan AE]]
-
[[Category: McPherson, D T.]]
+
[[Category: McPherson DT]]
-
[[Category: Parker, W B.]]
+
[[Category: Parker WB]]
-
[[Category: Secrist, J A.]]
+
[[Category: Secrist JA]]
-
[[Category: Sorscher, E J.]]
+
[[Category: Sorscher EJ]]
-
[[Category: Glycosyltransferase]]
+
-
[[Category: Transferase]]
+

Current revision

Native PNP +ALLO

PDB ID 1oty

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1oty"
Personal tools