1pdp
From Proteopedia
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| - | [[Image:1pdp.png|left|200px]] | ||
| - | + | ==Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction== | |
| - | + | <SX load='1pdp' size='340' side='right' viewer='molstar' caption='[[1pdp]], [[Resolution|resolution]] 12.00Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1pdp]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PDP FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 12Å</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pdp OCA], [https://pdbe.org/1pdp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pdp RCSB], [https://www.ebi.ac.uk/pdbsum/1pdp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pdp ProSAT]</span></td></tr> | |
| - | == | + | </table> |
| - | [[1pdp]] is a 18 chain structure with sequence from [ | + | == Function == |
| - | + | [https://www.uniprot.org/uniprot/BP09_BPT4 BP09_BPT4] Baseplate protein that connects the long tail fibers to the baseplate and probably triggers the tail contraction after virus attachment to a host cell (PubMed:10545330). Involved in the tail assembly (PubMed:21129200).<ref>PMID:10545330</ref> <ref>PMID:21129200</ref> | |
| - | == | + | == Evolutionary Conservation == |
| - | < | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: Arisaka | + | <jmolCheckbox> |
| - | [[Category: Chipman | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/1pdp_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Kanamaru | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Kostyuchenko | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Leiman | + | </jmolCheckbox> |
| - | [[Category: Mesyanzhinov | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pdp ConSurf]. |
| - | + | <div style="clear:both"></div> | |
| - | [[Category: Rossmann | + | == References == |
| - | [[Category: | + | <references/> |
| + | __TOC__ | ||
| + | </SX> | ||
| + | [[Category: Escherichia virus T4]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Arisaka F]] | ||
| + | [[Category: Chipman PR]] | ||
| + | [[Category: Kanamaru S]] | ||
| + | [[Category: Kostyuchenko VA]] | ||
| + | [[Category: Leiman PG]] | ||
| + | [[Category: Mesyanzhinov VV]] | ||
| + | [[Category: Rossmann MG]] | ||
| + | [[Category: Van Raaij MJ]] | ||
Current revision
Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction
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