1p9k
From Proteopedia
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- | [[Image:1p9k.png|left|200px]] | ||
- | + | ==THE SOLUTION STRUCTURE OF YBCJ FROM E. COLI REVEALS A RECENTLY DISCOVERED ALFAL MOTIF INVOLVED IN RNA-BINDING== | |
- | + | <StructureSection load='1p9k' size='340' side='right'caption='[[1p9k]]' scene=''> | |
- | + | == Structural highlights == | |
- | + | <table><tr><td colspan='2'>[[1p9k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1o09 1o09]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P9K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P9K FirstGlance]. <br> | |
- | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p9k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p9k OCA], [https://pdbe.org/1p9k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p9k RCSB], [https://www.ebi.ac.uk/pdbsum/1p9k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p9k ProSAT], [https://www.topsan.org/Proteins/BSGI/1p9k TOPSAN]</span></td></tr> | |
- | == | + | </table> |
- | [[1p9k]] is a 1 chain structure with sequence from [ | + | == Function == |
- | + | [https://www.uniprot.org/uniprot/YBCJ_ECOLI YBCJ_ECOLI] Its structure and the presence of conserved basic residues indicates that it probably binds RNA. | |
- | == | + | == Evolutionary Conservation == |
- | < | + | [[Image:Consurf_key_small.gif|200px|right]] |
- | [[ | + | Check<jmol> |
- | [[ | + | <jmolCheckbox> |
- | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/1p9k_consurf.spt"</scriptWhenChecked> | |
- | [ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
- | [[ | + | <text>to colour the structure by Evolutionary Conservation</text> |
- | [ | + | </jmolCheckbox> |
- | [[ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1p9k ConSurf]. |
- | [[Category: | + | <div style="clear:both"></div> |
- | [[Category: | + | __TOC__ |
- | [[Category: | + | </StructureSection> |
- | [[Category: | + | [[Category: Escherichia coli K-12]] |
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: | + | [[Category: Cygler M]] |
- | [[Category: | + | [[Category: Ekiel I]] |
- | [[Category: | + | [[Category: Gandhi S]] |
- | [[Category: | + | [[Category: Gehring K]] |
- | [[Category: | + | [[Category: Iannuzzi P]] |
- | [[Category: | + | [[Category: Larocque R]] |
- | [[Category: | + | [[Category: Lievre C]] |
+ | [[Category: Matte A]] | ||
+ | [[Category: Osborne MJ]] | ||
+ | [[Category: Volpon L]] |
Current revision
THE SOLUTION STRUCTURE OF YBCJ FROM E. COLI REVEALS A RECENTLY DISCOVERED ALFAL MOTIF INVOLVED IN RNA-BINDING
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Categories: Escherichia coli K-12 | Large Structures | Cygler M | Ekiel I | Gandhi S | Gehring K | Iannuzzi P | Larocque R | Lievre C | Matte A | Osborne MJ | Volpon L