3dwv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3dwv" [edit=sysop:move=sysop])
Current revision (15:15, 1 November 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3dwv.png|left|200px]]
 
-
{{STRUCTURE_3dwv| PDB=3dwv | SCENE= }}
+
==Glutathione peroxidase-type tryparedoxin peroxidase, oxidized form==
 +
<StructureSection load='3dwv' size='340' side='right'caption='[[3dwv]], [[Resolution|resolution]] 1.41&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3dwv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DWV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DWV FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.41&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dwv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dwv OCA], [https://pdbe.org/3dwv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dwv RCSB], [https://www.ebi.ac.uk/pdbsum/3dwv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dwv ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q869A5_9TRYP Q869A5_9TRYP]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dw/3dwv_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dwv ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Trypanosoma brucei, the causative agent of African sleeping sickness, encodes three cysteine homologues (Px I-III) of classical selenocysteine-containing glutathione peroxidases. The enzymes obtain their reducing equivalents from the unique trypanothione (bis(glutathionyl)spermidine)/tryparedoxin system. During catalysis, these tryparedoxin peroxidases cycle between an oxidized form with an intramolecular disulfide bond between Cys(47) and Cys(95) and the reduced peroxidase with both residues in the thiol state. Here we report on the three-dimensional structures of oxidized T. brucei Px III at 1.4A resolution obtained by x-ray crystallography and of both the oxidized and the reduced protein determined by NMR spectroscopy. Px III is a monomeric protein unlike the homologous poplar thioredoxin peroxidase (TxP). The structures of oxidized and reduced Px III are essentially identical in contrast to what was recently found for TxP. In Px III, Cys(47), Gln(82), and Trp(137) do not form the catalytic triad observed in the selenoenzymes, and related proteins and the latter two residues are unaffected by the redox state of the protein. The mutational analysis of three conserved lysine residues in the vicinity of the catalytic cysteines revealed that exchange of Lys(107) against glutamate abrogates the reduction of hydrogen peroxide, whereas Lys(97) and Lys(99) play a crucial role in the interaction with tryparedoxin.
-
===Glutathione peroxidase-type tryparedoxin peroxidase, oxidized form===
+
Structural basis for a distinct catalytic mechanism in Trypanosoma brucei tryparedoxin peroxidase.,Melchers J, Diechtierow M, Feher K, Sinning I, Tews I, Krauth-Siegel RL, Muhle-Goll C J Biol Chem. 2008 Oct 31;283(44):30401-11. Epub 2008 Aug 6. PMID:18684708<ref>PMID:18684708</ref>
-
{{ABSTRACT_PUBMED_18684708}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 3dwv" style="background-color:#fffaf0;"></div>
-
[[3dwv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DWV OCA].
+
== References ==
-
[[Category: Glutathione peroxidase]]
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Trypanosoma brucei]]
[[Category: Trypanosoma brucei]]
-
[[Category: Krauth-Siegel, L.]]
+
[[Category: Krauth-Siegel L]]
-
[[Category: Sinning, I.]]
+
[[Category: Sinning I]]
-
[[Category: Tews, I.]]
+
[[Category: Tews I]]
-
[[Category: Alpha beta]]
+
-
[[Category: Glutaredoxin fold]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Peroxidase]]
+

Current revision

Glutathione peroxidase-type tryparedoxin peroxidase, oxidized form

PDB ID 3dwv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools