3zg8

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(New page: '''Unreleased structure''' The entry 3zg8 is ON HOLD until Paper Publication Authors: Jeong, J.H., Kim, Y.G. Description: Crystal Structure of Penicillin Binding Protein 4 from Listeri...)
Current revision (11:01, 20 December 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 3zg8 is ON HOLD until Paper Publication
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==Crystal Structure of Penicillin Binding Protein 4 from Listeria monocytogenes in the Ampicillin bound form==
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<StructureSection load='3zg8' size='340' side='right'caption='[[3zg8]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3zg8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes Listeria monocytogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZG8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZG8 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.094&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AIX:(2R,4S)-2-[(1R)-1-{[(2R)-2-AMINO-2-PHENYLACETYL]AMINO}-2-OXOETHYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXYLIC+ACID'>AIX</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zg8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zg8 OCA], [https://pdbe.org/3zg8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zg8 RCSB], [https://www.ebi.ac.uk/pdbsum/3zg8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zg8 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8Y547_LISMO Q8Y547_LISMO]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Penicillin-binding proteins (PBPs), which catalyze the biosynthesis of the peptidoglycan chain of the bacterial cell wall, are the major molecular target of bacterial antibiotics. Here, we present the crystal structures of the bifunctional peptidoglycan glycosyltransferase (GT)/transpeptidase (TP) PBP4 from Listeria monocytogenes in the apo-form and covalently linked to two beta-lactam antibiotics, ampicillin and carbenicillin. The orientation of the TP domain with respect to the GT domain is distinct from that observed in the previously reported structures of bifunctional PBPs, suggesting an inter-domain flexibility. In this structure, the active site of the GT domain is occluded by the close apposition of the linker domain, which supports the hypothesis that inter-domain flexibility is related to the regulation of GT activity. The acylated structures reveal the mode of action of beta-lactam antibiotics to the class A PBP4 from the human pathogen L. monocytogenes. Ampicillin and carbenicillin can access the active site and be acylated without requiring a structural rearrangement. In addition, the active site of the TP domain in the apo-form is occupied by the tartrate molecule via extensive hydrogen bond interactions with the catalytically important residues; thus, derivatives of the tartrate molecule may be useful in the search for new antibiotics to inhibit PBPs.
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Authors: Jeong, J.H., Kim, Y.G.
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Crystal structures of bifunctional Penicillin-Binding Protein 4 from Listeria monocytogenes.,Jeong JH, Kim YS, Rojviriya C, Ha SC, Kang BS, Kim YG Antimicrob Agents Chemother. 2013 May 13. PMID:23669378<ref>PMID:23669378</ref>
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Description: Crystal Structure of Penicillin Binding Protein 4 from Listeria monocytogenes in the Ampicillin bound form
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3zg8" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Penicillin-binding protein 3D structures|Penicillin-binding protein 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Listeria monocytogenes]]
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[[Category: Jeong JH]]
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[[Category: Kim YG]]

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Crystal Structure of Penicillin Binding Protein 4 from Listeria monocytogenes in the Ampicillin bound form

PDB ID 3zg8

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