4iid
From Proteopedia
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of beta-glucosidase 1 from Aspergillus aculeatus in complex with 1-deoxynojirimycin== | |
| + | <StructureSection load='4iid' size='340' side='right'caption='[[4iid]], [[Resolution|resolution]] 2.30Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[4iid]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_aculeatus Aspergillus aculeatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IID OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IID FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NOJ:1-DEOXYNOJIRIMYCIN'>NOJ</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4iid FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4iid OCA], [https://pdbe.org/4iid PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4iid RCSB], [https://www.ebi.ac.uk/pdbsum/4iid PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4iid ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/BGL1_ASPAC BGL1_ASPAC] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Glycoside hydrolase family 3 (GH3) beta-glucosidases (BGLs) from filamentous fungi have been widely and commercially used for supplementation of cellulases. BGL from the fungus Aspergillus aculeatus (AaBGL1) belongs to GH3 and shows high activity toward cellooligosaccharides up to high degree of polymerization. Here we determined the crystal structure of AaBGL1. In addition to the substrate-free structure, complex structures with glucose and various inhibitors were determined. The AaBGL1 structure is highly glycosylated with 88 monosaccharides (18 N-glycan chains) in the dimer. The largest N-glycan chain comprises 10 monosaccharides and is one of the largest glycans ever observed in protein crystal structures. A prominent insertion region exists in a fibronectin type III domain, and this region extends to cover a wide surface area of the enzyme. The subsite +1 of AaBGL1 is highly hydrophobic. Three aromatic residues are involved in the subsite +1 and located in short loop regions that are uniquely present in this enzyme. There is a long cleft extending from the subsite +1, which appears to be suitable for binding long cellooligosaccharides. The crystal structures of AaBGL1 will provide an important structural basis for the technical improvement of enzymatic cellulosic biomass conversion. | ||
| - | + | Crystal Structures of Glycoside Hydrolase Family 3 beta-Glucosidase 1 from Aspergillus aculeatus.,Suzuki K, Sumitani JI, Nam YW, Nishimaki T, Tani S, Wakagi T, Kawaguchi T, Fushinobu S Biochem J. 2013 Mar 28. PMID:23537284<ref>PMID:23537284</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| + | </div> | ||
| + | <div class="pdbe-citations 4iid" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Beta-glucosidase 3D structures|Beta-glucosidase 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Aspergillus aculeatus]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Fushinobu S]] | ||
| + | [[Category: Kawaguchi T]] | ||
| + | [[Category: Sumitani J]] | ||
| + | [[Category: Suzuki K]] | ||
Current revision
Crystal structure of beta-glucosidase 1 from Aspergillus aculeatus in complex with 1-deoxynojirimycin
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