This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1sum

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1sum" [edit=sysop:move=sysop])
Current revision (08:35, 1 May 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1sum.png|left|200px]]
 
-
{{STRUCTURE_1sum| PDB=1sum | SCENE= }}
+
==Crystal structure of a hypothetical protein at 2.0 A resolution==
-
 
+
<StructureSection load='1sum' size='340' side='right'caption='[[1sum]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
===Crystal structure of a hypothetical protein at 2.0 A resolution===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1sum]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SUM FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_15716271}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PO3:PHOSPHITE+ION'>PO3</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sum FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sum OCA], [https://pdbe.org/1sum PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sum RCSB], [https://www.ebi.ac.uk/pdbsum/1sum PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sum ProSAT], [https://www.topsan.org/Proteins/BSGC/1sum TOPSAN]</span></td></tr>
-
[[1sum]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUM OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/PHOU2_THEMA PHOU2_THEMA] Plays a role in the regulation of phosphate uptake (By similarity).
-
<ref group="xtra">PMID:015716271</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/su/1sum_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sum ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: Adams, P D.]]
+
[[Category: Adams PD]]
-
[[Category: BSGC, Berkeley Structural Genomics Center.]]
+
[[Category: Kim R]]
-
[[Category: Kim, R.]]
+
[[Category: Kim SH]]
-
[[Category: Kim, S H.]]
+
[[Category: Liu J]]
-
[[Category: Liu, J.]]
+
[[Category: Lou Y]]
-
[[Category: Lou, Y.]]
+
[[Category: Yokota H]]
-
[[Category: Yokota, H.]]
+
-
[[Category: Abc transport]]
+
-
[[Category: Berkeley structural genomics center]]
+
-
[[Category: Bsgc]]
+
-
[[Category: Phou]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Pst]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Structure funded by nih]]
+
-
[[Category: Transport protein]]
+

Current revision

Crystal structure of a hypothetical protein at 2.0 A resolution

PDB ID 1sum

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools