1s7d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:22, 30 October 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1s7d.png|left|200px]]
 
-
{{STRUCTURE_1s7d| PDB=1s7d | SCENE= }}
+
==Crystal structure of refined tetragonal crystal of YodA from Escherichia coli==
-
 
+
<StructureSection load='1s7d' size='340' side='right'caption='[[1s7d]], [[Resolution|resolution]] 2.17&Aring;' scene=''>
-
===Crystal structure of refined tetragonal crystal of YodA from Escherichia coli===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1s7d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S7D FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.17&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[1s7d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s7d OCA], [https://pdbe.org/1s7d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1s7d RCSB], [https://www.ebi.ac.uk/pdbsum/1s7d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s7d ProSAT], [https://www.topsan.org/Proteins/BSGC/1s7d TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ZINT_ECOLI ZINT_ECOLI] May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites.<ref>PMID:17931600</ref> <ref>PMID:19377097</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s7/1s7d_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1s7d ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: BSGC, Berkeley Structural Genomics Center.]]
+
[[Category: Large Structures]]
-
[[Category: Kim, R.]]
+
[[Category: Kim R]]
-
[[Category: Kim, S H.]]
+
[[Category: Kim SH]]
-
[[Category: Shin, D H.]]
+
[[Category: Shin DH]]
-
[[Category: Yokota, H.]]
+
[[Category: Yokota H]]
-
[[Category: Berkeley structural genomics center]]
+
-
[[Category: Bsgc structure funded by nih]]
+
-
[[Category: Hypothetical]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: X-ray crytsallography]]
+

Current revision

Crystal structure of refined tetragonal crystal of YodA from Escherichia coli

PDB ID 1s7d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1s7d"
Personal tools