This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1rqc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1rqc" [edit=sysop:move=sysop])
Current revision (08:26, 1 May 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1rqc.png|left|200px]]
 
-
{{STRUCTURE_1rqc| PDB=1rqc | SCENE= }}
+
==Crystals of peptide deformylase from Plasmodium falciparum with ten subunits per asymmetric unit reveal critical characteristics of the active site for drug design==
-
 
+
<StructureSection load='1rqc' size='340' side='right'caption='[[1rqc]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
===Crystals of peptide deformylase from Plasmodium falciparum with ten subunits per asymmetric unit reveal critical characteristics of the active site for drug design===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1rqc]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RQC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RQC FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_15010544}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rqc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rqc OCA], [https://pdbe.org/1rqc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rqc RCSB], [https://www.ebi.ac.uk/pdbsum/1rqc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rqc ProSAT]</span></td></tr>
-
[[1rqc]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RQC OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/Q8I372_PLAF7 Q8I372_PLAF7]
-
<ref group="xtra">PMID:015010544</ref><ref group="xtra">PMID:016516468</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rq/1rqc_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rqc ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Plasmodium falciparum]]
[[Category: Plasmodium falciparum]]
-
[[Category: Hirsh, I.]]
+
[[Category: Hirsh I]]
-
[[Category: Hol, W G.]]
+
[[Category: Hol WG]]
-
[[Category: Kumar, A.]]
+
[[Category: Kumar A]]
-
[[Category: Nguyen, K T.]]
+
[[Category: Nguyen KT]]
-
[[Category: Pei, D.]]
+
[[Category: Pei D]]
-
[[Category: Robien, M A.]]
+
[[Category: Robien MA]]
-
[[Category: Turley, S.]]
+
[[Category: Turley S]]
-
[[Category: Hydrolase]]
+

Current revision

Crystals of peptide deformylase from Plasmodium falciparum with ten subunits per asymmetric unit reveal critical characteristics of the active site for drug design

PDB ID 1rqc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools