This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1xw8
From Proteopedia
(Difference between revisions)
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1xw8.png|left|200px]] | ||
| - | + | ==X-ray structure of putative lactam utilization protein YBGL. Northeast Structural Genomics Consortium target ET90.== | |
| - | + | <StructureSection load='1xw8' size='340' side='right'caption='[[1xw8]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1xw8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XW8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XW8 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> | |
| - | == | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[1xw8]] is a 1 chain structure with sequence from [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xw8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xw8 OCA], [https://pdbe.org/1xw8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xw8 RCSB], [https://www.ebi.ac.uk/pdbsum/1xw8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xw8 ProSAT], [https://www.topsan.org/Proteins/NESGC/1xw8 TOPSAN]</span></td></tr> |
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/PXPA_ECOLI PXPA_ECOLI] Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.[HAMAP-Rule:MF_00691]<ref>PMID:28830929</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xw/1xw8_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xw8 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
| - | [[Category: Acton | + | [[Category: Large Structures]] |
| - | [[Category: Chen | + | [[Category: Acton TB]] |
| - | [[Category: Hunt | + | [[Category: Chen Y]] |
| - | [[Category: Kuzin | + | [[Category: Hunt JF]] |
| - | [[Category: Ma | + | [[Category: Kuzin AP]] |
| - | [[Category: Montelione | + | [[Category: Ma L-C]] |
| - | + | [[Category: Montelione GT]] | |
| - | [[Category: Tong | + | [[Category: Tong L]] |
| - | [[Category: Vorobiev | + | [[Category: Vorobiev SM]] |
| - | [[Category: Xiao | + | [[Category: Xiao R]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
X-ray structure of putative lactam utilization protein YBGL. Northeast Structural Genomics Consortium target ET90.
| |||||||||||
Categories: Escherichia coli | Large Structures | Acton TB | Chen Y | Hunt JF | Kuzin AP | Ma L-C | Montelione GT | Tong L | Vorobiev SM | Xiao R

