1v02

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1v02" [edit=sysop:move=sysop])
Current revision (08:52, 6 November 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1v02.png|left|200px]]
 
-
{{STRUCTURE_1v02| PDB=1v02 | SCENE= }}
+
==Crystal structure of the Sorghum bicolor dhurrinase 1==
 +
<StructureSection load='1v02' size='340' side='right'caption='[[1v02]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Sorghum_bicolor Sorghum bicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V02 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v02 OCA], [https://pdbe.org/1v02 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v02 RCSB], [https://www.ebi.ac.uk/pdbsum/1v02 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v02 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q41290_SORBI Q41290_SORBI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/1v02_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v02 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Plant beta-glucosidases play a crucial role in defense against pests. They cleave, with variable specificity, beta-glucosides to release toxic aglycone moieties. The Sorghum bicolor beta-glucosidase isoenzyme Dhr1 has a strict specificity for its natural substrate dhurrin (p-hydroxy-(S)-mandelonitrile-beta-D-glucoside), whereas its close homolog, the maize beta-glucosidase isoenzyme Glu1, which shares 72% sequence identity, hydrolyzes a broad spectrum of substrates in addition to its natural substrate 2-O-beta-D-glucopyranosyl-4-hydroxy-7-methoxy-1,4-benzoxaxin-3-one. Structural data from enzyme.substrate complexes of Dhr1 show that the mode of aglycone binding differs from that previously observed in the homologous maize enzyme. Specifically, the data suggest that Asn(259), Phe(261), and Ser(462), located in the aglycone-binding site of S. bicolor Dhr1, are crucial for aglycone recognition and binding. The tight binding of the aglycone moiety of dhurrin promotes the stabilization of the reaction intermediate in which the glycone moiety is in a deformed (1)S(3) conformation within the glycone-binding site, ready for nucleophilic attack to occur. Compared with the broad specificity maize beta-glucosidase, this different binding mode explains the narrow specificity of sorghum dhurrinase-1.
-
===CRYSTAL STRUCTURE OF THE SORGHUM BICOLOR DHURRINASE 1===
+
Structural determinants of substrate specificity in family 1 beta-glucosidases: novel insights from the crystal structure of sorghum dhurrinase-1, a plant beta-glucosidase with strict specificity, in complex with its natural substrate.,Verdoucq L, Moriniere J, Bevan DR, Esen A, Vasella A, Henrissat B, Czjze M J Biol Chem. 2004 Jul 23;279(30):31796-803. Epub 2004 May 17. PMID:15148317<ref>PMID:15148317</ref>
-
{{ABSTRACT_PUBMED_15148317}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 1v02" style="background-color:#fffaf0;"></div>
-
[[1v02]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sorghum_bicolor Sorghum bicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA].
+
== References ==
-
 
+
<references/>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:015148317</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Beta-glucosidase]]
+
[[Category: Large Structures]]
[[Category: Sorghum bicolor]]
[[Category: Sorghum bicolor]]
-
[[Category: Bevan, D R.]]
+
[[Category: Bevan DR]]
-
[[Category: Czjzek, M.]]
+
[[Category: Czjzek M]]
-
[[Category: Esen, A.]]
+
[[Category: Esen A]]
-
[[Category: Henrissat, B.]]
+
[[Category: Henrissat B]]
-
[[Category: Moriniere, J.]]
+
[[Category: Moriniere J]]
-
[[Category: Verdoucq, L.]]
+
[[Category: Verdoucq L]]
-
[[Category: Beta-glucosidase]]
+
-
[[Category: Dhurrin hydrolysis]]
+
-
[[Category: Family gh1]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Pest defense]]
+

Current revision

Crystal structure of the Sorghum bicolor dhurrinase 1

PDB ID 1v02

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools