This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1t0u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1t0u" [edit=sysop:move=sysop])
Current revision (13:29, 13 March 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1t0u.png|left|200px]]
 
-
{{STRUCTURE_1t0u| PDB=1t0u | SCENE= }}
+
==Crystal structure of E.coli uridine phosphorylase at 2.2 A resolution (Type-A Native)==
 +
<StructureSection load='1t0u' size='340' side='right'caption='[[1t0u]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1t0u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1lgg 1lgg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T0U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T0U FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t0u OCA], [https://pdbe.org/1t0u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t0u RCSB], [https://www.ebi.ac.uk/pdbsum/1t0u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t0u ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/UDP_ECOLI UDP_ECOLI] Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t0/1t0u_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t0u ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of E.coli uridine phosphorylase at 2.2 A resolution (Type-A Native)===
+
==See Also==
-
 
+
*[[Uridine phosphorylase 3D structures|Uridine phosphorylase 3D structures]]
-
{{ABSTRACT_PUBMED_15003451}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
[[1t0u]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1lgg 1lgg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T0U OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:015003451</ref><references group="xtra"/>
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Uridine phosphorylase]]
+
[[Category: Large Structures]]
-
[[Category: Caradoc-Davies, T T.]]
+
[[Category: Caradoc-Davies TT]]
-
[[Category: Cutfield, J F.]]
+
[[Category: Cutfield JF]]
-
[[Category: Cutfield, S M.]]
+
[[Category: Cutfield SM]]
-
[[Category: Lamont, I L.]]
+
[[Category: Lamont IL]]
-
[[Category: Pentosyltransferase]]
+
-
[[Category: Transferase]]
+
-
[[Category: Uridine phosphorylase]]
+

Current revision

Crystal structure of E.coli uridine phosphorylase at 2.2 A resolution (Type-A Native)

PDB ID 1t0u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools