This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1t5o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1t5o" [edit=sysop:move=sysop])
Current revision (08:38, 1 May 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1t5o.png|left|200px]]
 
-
{{STRUCTURE_1t5o| PDB=1t5o | SCENE= }}
+
==Crystal structure of the translation initiation factor eIF-2B, subunit delta, from A. fulgidus==
-
 
+
<StructureSection load='1t5o' size='340' side='right'caption='[[1t5o]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
===Crystal structure of the translation initiation factor eIF-2B, subunit delta, from A. fulgidus===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1t5o]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_DSM_4304 Archaeoglobus fulgidus DSM 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T5O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T5O FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t5o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t5o OCA], [https://pdbe.org/1t5o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t5o RCSB], [https://www.ebi.ac.uk/pdbsum/1t5o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t5o ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1t5o TOPSAN]</span></td></tr>
-
[[1t5o]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T5O OCA].
+
</table>
-
[[Category: Archaeoglobus fulgidus]]
+
== Function ==
-
[[Category: Almo, S C.]]
+
[https://www.uniprot.org/uniprot/MTNA_ARCFU MTNA_ARCFU] Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).[HAMAP-Rule:MF_01678]
-
[[Category: Burley, S K.]]
+
== Evolutionary Conservation ==
-
[[Category: Malashkevich, V N.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
Check<jmol>
-
[[Category: New york sgx research center for structural genomic]]
+
<jmolCheckbox>
-
[[Category: Nysgxrc]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t5/1t5o_consurf.spt"</scriptWhenChecked>
-
[[Category: Protein structure initiative]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Psi]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Structural genomic]]
+
</jmolCheckbox>
-
[[Category: Subunit delta]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t5o ConSurf].
-
[[Category: Translation]]
+
<div style="clear:both"></div>
-
[[Category: Translation initiation factor]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Archaeoglobus fulgidus DSM 4304]]
 +
[[Category: Large Structures]]
 +
[[Category: Almo SC]]
 +
[[Category: Burley SK]]
 +
[[Category: Malashkevich VN]]

Current revision

Crystal structure of the translation initiation factor eIF-2B, subunit delta, from A. fulgidus

PDB ID 1t5o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools