This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1xma

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:51, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1xma.png|left|200px]]
 
-
{{STRUCTURE_1xma| PDB=1xma | SCENE= }}
+
==Structure of a transcriptional regulator from Clostridium thermocellum Cth-833==
-
 
+
<StructureSection load='1xma' size='340' side='right'caption='[[1xma]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
===Structure of a transcriptional regulator from Clostridium thermocellum Cth-833===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1xma]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XMA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XMA FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.301&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-
[[1xma]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XMA OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xma FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xma OCA], [https://pdbe.org/1xma PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xma RCSB], [https://www.ebi.ac.uk/pdbsum/1xma PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xma ProSAT], [https://www.topsan.org/Proteins/SECSG/1xma TOPSAN]</span></td></tr>
-
[[Category: Clostridium thermocellum]]
+
</table>
-
[[Category: Chang, J.]]
+
== Function ==
-
[[Category: Chang, S H.]]
+
[https://www.uniprot.org/uniprot/A3DGR1_ACET2 A3DGR1_ACET2]
-
[[Category: Chen, L.]]
+
== Evolutionary Conservation ==
-
[[Category: Florence, Q.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Habel, J.]]
+
Check<jmol>
-
[[Category: Horanyi, P.]]
+
<jmolCheckbox>
-
[[Category: III, W B.Arendall.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xm/1xma_consurf.spt"</scriptWhenChecked>
-
[[Category: Kataeva, I.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Lee, D.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Lin, D.]]
+
</jmolCheckbox>
-
[[Category: Liu, Z J.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xma ConSurf].
-
[[Category: Ljungdahl, L.]]
+
<div style="clear:both"></div>
-
[[Category: Nguyen, J.]]
+
__TOC__
-
[[Category: Praissman, J.]]
+
</StructureSection>
-
[[Category: Richardson, D C.]]
+
[[Category: Acetivibrio thermocellus]]
-
[[Category: Richardson, J S.]]
+
[[Category: Large Structures]]
-
[[Category: Rose, J P.]]
+
[[Category: Arendall III WB]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Chang J]]
-
[[Category: Tempel, W.]]
+
[[Category: Chang S-H]]
-
[[Category: Wang, B C.]]
+
[[Category: Chen L]]
-
[[Category: Xu, H.]]
+
[[Category: Florence Q]]
-
[[Category: Yang, H.]]
+
[[Category: Habel J]]
-
[[Category: Zhang, H.]]
+
[[Category: Horanyi P]]
-
[[Category: Zhao, M.]]
+
[[Category: Kataeva I]]
-
[[Category: Zhou, W.]]
+
[[Category: Lee D]]
-
[[Category: Clostridium thermocellum]]
+
[[Category: Lin D]]
-
[[Category: Protein structure initiative]]
+
[[Category: Liu Z-J]]
-
[[Category: Psi]]
+
[[Category: Ljungdahl L]]
-
[[Category: Secsg]]
+
[[Category: Nguyen J]]
-
[[Category: Southeast collaboratory for structural genomic]]
+
[[Category: Praissman J]]
-
[[Category: Transcription]]
+
[[Category: Richardson DC]]
-
[[Category: Transcriptional regulator]]
+
[[Category: Richardson JS]]
 +
[[Category: Rose JP]]
 +
[[Category: Tempel W]]
 +
[[Category: Wang B-C]]
 +
[[Category: Xu H]]
 +
[[Category: Yang H]]
 +
[[Category: Zhang H]]
 +
[[Category: Zhao M]]
 +
[[Category: Zhou W]]

Current revision

Structure of a transcriptional regulator from Clostridium thermocellum Cth-833

PDB ID 1xma

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1xma"
Personal tools