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1wyv

From Proteopedia

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[[Image:1wyv.png|left|200px]]
 
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{{STRUCTURE_1wyv| PDB=1wyv | SCENE= }}
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==Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in inhibitor-bound form==
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<StructureSection load='1wyv' size='340' side='right'caption='[[1wyv]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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===Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in inhibitor-bound form===
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1wyv]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WYV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WYV FirstGlance]. <br>
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{{ABSTRACT_PUBMED_15791207}}
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AOA:(AMINOOXY)ACETIC+ACID'>AOA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
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==About this Structure==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wyv OCA], [https://pdbe.org/1wyv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wyv RCSB], [https://www.ebi.ac.uk/pdbsum/1wyv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wyv ProSAT], [https://www.topsan.org/Proteins/RSGI/1wyv TOPSAN]</span></td></tr>
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[[1wyv]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WYV OCA].
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</table>
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== Function ==
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==Reference==
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[https://www.uniprot.org/uniprot/Q5SKW8_THET8 Q5SKW8_THET8] The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (By similarity).[HAMAP-Rule:MF_00712][SAAS:SAAS023010_004_045580]
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<ref group="xtra">PMID:015791207</ref><references group="xtra"/>
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== Evolutionary Conservation ==
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[[Category: Thermus thermophilus]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Kamiya, N.]]
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Check<jmol>
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[[Category: Kuramitsu, S.]]
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<jmolCheckbox>
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[[Category: Maoka, N.]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wy/1wyv_consurf.spt"</scriptWhenChecked>
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[[Category: Masui, R.]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Nakagawa, N.]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Nakai, T.]]
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</jmolCheckbox>
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wyv ConSurf].
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[[Category: Oxidoreductase]]
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<div style="clear:both"></div>
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[[Category: Riken structural genomics/proteomics initiative]]
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__TOC__
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[[Category: Rsgi]]
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</StructureSection>
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[[Category: Structural genomic]]
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[[Category: Large Structures]]
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[[Category: Thermus thermophilus HB8]]
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[[Category: Kamiya N]]
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[[Category: Kuramitsu S]]
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[[Category: Maoka N]]
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[[Category: Masui R]]
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[[Category: Nakagawa N]]
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[[Category: Nakai T]]

Current revision

Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in inhibitor-bound form

PDB ID 1wyv

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