1wy2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:01, 25 October 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1wy2.png|left|200px]]
 
-
{{STRUCTURE_1wy2| PDB=1wy2 | SCENE= }}
+
==Crystal Structure of the Prolidase from Pyrococcus horikoshii OT3==
-
 
+
<StructureSection load='1wy2' size='340' side='right'caption='[[1wy2]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
===Crystal Structure of the Prolidase from Pyrococcus horikoshii OT3===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1wy2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WY2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WY2 FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[1wy2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WY2 OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wy2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wy2 OCA], [https://pdbe.org/1wy2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wy2 RCSB], [https://www.ebi.ac.uk/pdbsum/1wy2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wy2 ProSAT], [https://www.topsan.org/Proteins/RSGI/1wy2 TOPSAN]</span></td></tr>
-
[[Category: Pyrococcus horikoshii]]
+
</table>
-
[[Category: Xaa-Pro dipeptidase]]
+
== Function ==
-
[[Category: Kunishima, N.]]
+
[https://www.uniprot.org/uniprot/PEPQ_PYRHO PEPQ_PYRHO] Splits dipeptides with a prolyl in the C-terminal position and a nonpolar amino acid at the N-terminal position (By similarity).
-
[[Category: Mizutani, H.]]
+
== Evolutionary Conservation ==
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Hydrolase]]
+
Check<jmol>
-
[[Category: Prolidase]]
+
<jmolCheckbox>
-
[[Category: Riken structural genomics/proteomics initiative]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wy/1wy2_consurf.spt"</scriptWhenChecked>
-
[[Category: Rsgi]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Structural genomic]]
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wy2 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pyrococcus horikoshii OT3]]
 +
[[Category: Kunishima N]]
 +
[[Category: Mizutani H]]

Current revision

Crystal Structure of the Prolidase from Pyrococcus horikoshii OT3

PDB ID 1wy2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools