1t2r

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[[Image:1t2r.png|left|200px]]
 
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{{STRUCTURE_1t2r| PDB=1t2r | SCENE= }}
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==Structural basis for 3' end recognition of nucleic acids by the Drosophila Argonaute 2 PAZ domain==
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<StructureSection load='1t2r' size='340' side='right'caption='[[1t2r]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1t2r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T2R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T2R FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t2r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t2r OCA], [https://pdbe.org/1t2r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t2r RCSB], [https://www.ebi.ac.uk/pdbsum/1t2r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t2r ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AGO2_DROME AGO2_DROME] Essential for RNA interference (RNAi); double-stranded RNA induces potent and specific gene silencing. RNAi is mediated by the RNA-induced silencing complex (RISC), a sequence-specific, multicomponent nuclease that destroys or silences messenger RNAs homologous to the silencing trigger.<ref>PMID:11498593</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t2/1t2r_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t2r ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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We describe the solution structures of the Argonaute2 PAZ domain bound to RNA and DNA oligonucleotides. The structures reveal a unique mode of single-stranded nucleic acid binding in which the two 3'-terminal nucleotides are buried in a hydrophobic cleft. We propose that the PAZ domain contributes to the specific recognition of siRNAs by providing a binding pocket for their characteristic two-nucleotide 3' overhangs.
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===Structural basis for 3' end recognition of nucleic acids by the Drosophila Argonaute 2 PAZ domain===
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Nucleic acid 3'-end recognition by the Argonaute2 PAZ domain.,Lingel A, Simon B, Izaurralde E, Sattler M Nat Struct Mol Biol. 2004 Jun;11(6):576-7. Epub 2004 May 23. PMID:15156196<ref>PMID:15156196</ref>
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{{ABSTRACT_PUBMED_15156196}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1t2r" style="background-color:#fffaf0;"></div>
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==About this Structure==
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==See Also==
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[[1t2r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T2R OCA].
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*[[Argonaute 3D structures|Argonaute 3D structures]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:015156196</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Drosophila melanogaster]]
[[Category: Drosophila melanogaster]]
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[[Category: Izaurralde, E.]]
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[[Category: Large Structures]]
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[[Category: Lingel, A.]]
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[[Category: Izaurralde E]]
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[[Category: Sattler, M.]]
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[[Category: Lingel A]]
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[[Category: Simon, B.]]
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[[Category: Sattler M]]
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[[Category: Nucleic acid binding protein]]
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[[Category: Simon B]]
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[[Category: Nucleic acid binding protein-rna complex]]
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[[Category: Rna]]
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Current revision

Structural basis for 3' end recognition of nucleic acids by the Drosophila Argonaute 2 PAZ domain

PDB ID 1t2r

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