This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1x0t

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:35, 13 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1x0t.png|left|200px]]
 
-
{{STRUCTURE_1x0t| PDB=1x0t | SCENE= }}
+
==Crystal structure of ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3==
 +
<StructureSection load='1x0t' size='340' side='right'caption='[[1x0t]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1x0t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X0T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X0T FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x0t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x0t OCA], [https://pdbe.org/1x0t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x0t RCSB], [https://www.ebi.ac.uk/pdbsum/1x0t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x0t ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RNP4_PYRHO RNP4_PYRHO] Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Binds RNase P RNA.<ref>PMID:12810070</ref> <ref>PMID:16574071</ref> <ref>PMID:16829535</ref> <ref>PMID:16142906</ref> <ref>PMID:18929577</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x0/1x0t_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x0t ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3===
+
==See Also==
-
 
+
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
-
{{ABSTRACT_PUBMED_16142906}}
+
== References ==
-
 
+
<references/>
-
==About this Structure==
+
__TOC__
-
[[1x0t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X0T OCA].
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
==Reference==
+
[[Category: Pyrococcus horikoshii OT3]]
-
<ref group="xtra">PMID:016142906</ref><references group="xtra"/>
+
[[Category: Ishimatsu I]]
-
[[Category: Pyrococcus horikoshii]]
+
[[Category: Kakuta Y]]
-
[[Category: Ribonuclease P]]
+
[[Category: Kimura K]]
-
[[Category: Ishimatsu, I.]]
+
[[Category: Kimura M]]
-
[[Category: Kakuta, Y.]]
+
[[Category: Numata T]]
-
[[Category: Kimura, K.]]
+
[[Category: Tanaka I]]
-
[[Category: Kimura, M.]]
+
[[Category: Yao M]]
-
[[Category: Numata, T.]]
+
-
[[Category: Tanaka, I.]]
+
-
[[Category: Yao, M.]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Pyrococcus horikoshii ot3]]
+
-
[[Category: Ribonuclease p protein]]
+

Current revision

Crystal structure of ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3

PDB ID 1x0t

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools