1vdm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1vdm" [edit=sysop:move=sysop])
Current revision (00:02, 28 December 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1vdm.png|left|200px]]
 
-
{{STRUCTURE_1vdm| PDB=1vdm | SCENE= }}
+
==Crystal structure of purine phosphoribosyltransferase from Pyrococcus horikoshii Ot3==
-
 
+
<StructureSection load='1vdm' size='340' side='right'caption='[[1vdm]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
===Crystal structure of purine phosphoribosyltransferase from Pyrococcus horikoshii Ot3===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1vdm]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VDM FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdm OCA], [https://pdbe.org/1vdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdm RCSB], [https://www.ebi.ac.uk/pdbsum/1vdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdm ProSAT], [https://www.topsan.org/Proteins/RSGI/1vdm TOPSAN]</span></td></tr>
-
[[1vdm]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDM OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/O57827_PYRHO O57827_PYRHO]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdm_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vdm ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Phosphoribosyltransferase|Phosphoribosyltransferase]]
+
*[[Phosphoribosyltransferase 3D structures|Phosphoribosyltransferase 3D structures]]
-
[[Category: Pyrococcus horikoshii]]
+
__TOC__
-
[[Category: Kunishima, N.]]
+
</StructureSection>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Large Structures]]
-
[[Category: Sugahara, M.]]
+
-
[[Category: Purine phosphoribosyltransferase]]
+
[[Category: Pyrococcus horikoshii]]
[[Category: Pyrococcus horikoshii]]
-
[[Category: Riken structural genomics/proteomics initiative]]
+
[[Category: Kunishima N]]
-
[[Category: Rsgi]]
+
[[Category: Sugahara M]]
-
[[Category: Structural genomic]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of purine phosphoribosyltransferase from Pyrococcus horikoshii Ot3

PDB ID 1vdm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1vdm"
Personal tools