This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1uf5
From Proteopedia
(Difference between revisions)
| (12 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1uf5.gif|left|200px]]<br /><applet load="1uf5" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1uf5, resolution 1.60Å" /> | ||
| - | '''Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase complexed with N-carbamyl-D-methionine'''<br /> | ||
| - | == | + | ==Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase complexed with N-carbamyl-D-methionine== |
| - | + | <StructureSection load='1uf5' size='340' side='right'caption='[[1uf5]], [[Resolution|resolution]] 1.60Å' scene=''> | |
| - | [[Category: Agrobacterium sp | + | == Structural highlights == |
| - | [[Category: | + | <table><tr><td colspan='2'>[[1uf5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_sp. Agrobacterium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UF5 FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> | |
| - | [[Category: Aoki | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CDT:4-METHYLSULFANYL-2-UREIDO-BUTYRIC+ACID'>CDT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> |
| - | [[Category: Hashimoto | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uf5 OCA], [https://pdbe.org/1uf5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uf5 RCSB], [https://www.ebi.ac.uk/pdbsum/1uf5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uf5 ProSAT]</span></td></tr> |
| - | [[Category: Ikenaka | + | </table> |
| - | [[Category: Morikawa | + | == Function == |
| - | [[Category: Nakai | + | [https://www.uniprot.org/uniprot/DCAS_AGRSK DCAS_AGRSK] The enzyme catalyzes the hydrolysis of N-carbamoyl-D-amino acids to the corresponding which are useful intermediates in the preparation of beta-lactam antibiotics. Industrial production of beta-lactam antibiotics is now being developed using this enzyme. |
| - | [[Category: Sato | + | == Evolutionary Conservation == |
| - | [[Category: Shimizu | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Takahashi | + | Check<jmol> |
| - | + | <jmolCheckbox> | |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uf/1uf5_consurf.spt"</scriptWhenChecked> | |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| - | + | </jmolCheckbox> | |
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1uf5 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Agrobacterium sp]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Aoki M]] | ||
| + | [[Category: Hashimoto H]] | ||
| + | [[Category: Ikenaka Y]] | ||
| + | [[Category: Morikawa H]] | ||
| + | [[Category: Nakai T]] | ||
| + | [[Category: Sato M]] | ||
| + | [[Category: Shimizu T]] | ||
| + | [[Category: Takahashi S]] | ||
Current revision
Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase complexed with N-carbamyl-D-methionine
| |||||||||||
Categories: Agrobacterium sp | Large Structures | Aoki M | Hashimoto H | Ikenaka Y | Morikawa H | Nakai T | Sato M | Shimizu T | Takahashi S

