This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1yb0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1yb0" [edit=sysop:move=sysop])
Current revision (08:56, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1yb0.png|left|200px]]
 
-
{{STRUCTURE_1yb0| PDB=1yb0 | SCENE= }}
+
==Structure of PlyL==
-
 
+
<StructureSection load='1yb0' size='340' side='right'caption='[[1yb0]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
-
===Structure of PlyL===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1yb0]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YB0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YB0 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_16103125}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yb0 OCA], [https://pdbe.org/1yb0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yb0 RCSB], [https://www.ebi.ac.uk/pdbsum/1yb0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yb0 ProSAT]</span></td></tr>
-
[[1yb0]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YB0 OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/A0A6H3AMF3_BACAN A0A6H3AMF3_BACAN]
-
<ref group="xtra">PMID:016103125</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1yb0_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yb0 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Bacillus anthracis]]
[[Category: Bacillus anthracis]]
-
[[Category: Liddington, R C.]]
+
[[Category: Large Structures]]
-
[[Category: Low, L Y.]]
+
[[Category: Liddington RC]]
-
[[Category: Osterman, A.]]
+
[[Category: Low LY]]
-
[[Category: Perego, M.]]
+
[[Category: Osterman A]]
-
[[Category: Yang, C.]]
+
[[Category: Perego M]]
-
[[Category: E c.3 5.1 28]]
+
[[Category: Yang C]]
-
[[Category: Hydrolase]]
+
-
[[Category: N-acetylmuramoyl-l-alanine amidase]]
+
-
[[Category: Plyl]]
+

Current revision

Structure of PlyL

PDB ID 1yb0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools