This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1y8q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1y8q" [edit=sysop:move=sysop])
Current revision (08:55, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1y8q.png|left|200px]]
 
-
{{STRUCTURE_1y8q| PDB=1y8q | SCENE= }}
+
==SUMO E1 ACTIVATING ENZYME SAE1-SAE2-MG-ATP COMPLEX==
 +
<StructureSection load='1y8q' size='340' side='right'caption='[[1y8q]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1y8q]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y8Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y8Q FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y8q OCA], [https://pdbe.org/1y8q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y8q RCSB], [https://www.ebi.ac.uk/pdbsum/1y8q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y8q ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SAE1_HUMAN SAE1_HUMAN] The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.<ref>PMID:9920803</ref> <ref>PMID:10217437</ref> <ref>PMID:10187858</ref> <ref>PMID:11481243</ref> <ref>PMID:11451954</ref> <ref>PMID:15660128</ref> <ref>PMID:20164921</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y8/1y8q_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y8q ConSurf].
 +
<div style="clear:both"></div>
-
===SUMO E1 ACTIVATING ENZYME SAE1-SAE2-MG-ATP COMPLEX===
+
==See Also==
-
 
+
*[[3D structures of Ubiquitin activating enzyme|3D structures of Ubiquitin activating enzyme]]
-
{{ABSTRACT_PUBMED_15660128}}
+
== References ==
-
 
+
<references/>
-
==About this Structure==
+
__TOC__
-
[[1y8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y8Q OCA].
+
</StructureSection>
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:015660128</ref><references group="xtra"/>
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Lima, C D.]]
+
[[Category: Large Structures]]
-
[[Category: Lois, L M.]]
+
[[Category: Lima CD]]
-
[[Category: Activating enzyme]]
+
[[Category: Lois LM]]
-
[[Category: E1]]
+
-
[[Category: Heterodimer]]
+
-
[[Category: Ligase]]
+
-
[[Category: Sumo]]
+
-
[[Category: Ubl]]
+

Current revision

SUMO E1 ACTIVATING ENZYME SAE1-SAE2-MG-ATP COMPLEX

PDB ID 1y8q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools