This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1zgs

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:39, 13 March 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1zgs.png|left|200px]]
 
-
{{STRUCTURE_1zgs| PDB=1zgs | SCENE= }}
+
==Parkia platycephala seed lectin in complex with 5-bromo-4-chloro-3-indolyl-a-D-mannose==
-
 
+
<StructureSection load='1zgs' size='340' side='right'caption='[[1zgs]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
===Parkia platycephala seed lectin in complex with 5-bromo-4-chloro-3-indolyl-a-D-mannose===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1zgs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Parkia_platycephala Parkia platycephala]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZGS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZGS FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_16185708}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=XMM:(2R,3S,4S,5S,6R)-2-(5-BROMO-4-CHLORO-1H-INDOL-3-YLOXY)-TETRAHYDRO-6-(HYDROXYMETHYL)-2H-PYRAN-3,4,5-TRIOL'>XMM</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zgs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zgs OCA], [https://pdbe.org/1zgs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zgs RCSB], [https://www.ebi.ac.uk/pdbsum/1zgs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zgs ProSAT]</span></td></tr>
-
[[1zgs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Parkia_platycephala Parkia platycephala]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZGS OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/LEC_PARPC LEC_PARPC] Mannose/glucose specific lectin. Shows agglutinating activity against rabbit erythrocytes.<ref>PMID:11502201</ref>
-
<ref group="xtra">PMID:016185708</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zg/1zgs_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zgs ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Parkia platycephala]]
[[Category: Parkia platycephala]]
-
[[Category: Calvete, J J.]]
+
[[Category: Calvete JJ]]
-
[[Category: Cavada, B S.]]
+
[[Category: Cavada BS]]
-
[[Category: Sol, F Gallego del.]]
+
[[Category: Gallego del Sol F]]
-
[[Category: Beta prism]]
+
-
[[Category: Lectin]]
+
-
[[Category: Sugar binding protein]]
+
-
[[Category: X-man]]
+

Current revision

Parkia platycephala seed lectin in complex with 5-bromo-4-chloro-3-indolyl-a-D-mannose

PDB ID 1zgs

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools