This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1ym5
From Proteopedia
(Difference between revisions)
| (7 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1ym5.png|left|200px]] | ||
| - | + | ==Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily.== | |
| - | + | <StructureSection load='1ym5' size='340' side='right'caption='[[1ym5]], [[Resolution|resolution]] 2.05Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1ym5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YM5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YM5 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05Å</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ym5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ym5 OCA], [https://pdbe.org/1ym5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ym5 RCSB], [https://www.ebi.ac.uk/pdbsum/1ym5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ym5 ProSAT]</span></td></tr> | |
| - | == | + | </table> |
| - | [[1ym5]] is a 1 chain structure with sequence from [ | + | == Function == |
| - | + | [https://www.uniprot.org/uniprot/YHI9_YEAST YHI9_YEAST] | |
| - | == | + | == Evolutionary Conservation == |
| - | < | + | [[Image:Consurf_key_small.gif|200px|right]] |
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ym/1ym5_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ym5 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Saccharomyces cerevisiae]] | [[Category: Saccharomyces cerevisiae]] | ||
| - | [[Category: Aboulfath | + | [[Category: Aboulfath I]] |
| - | [[Category: Blondeau | + | [[Category: Blondeau K]] |
| - | [[Category: Bremang | + | [[Category: Bremang M]] |
| - | [[Category: Janin | + | [[Category: Janin J]] |
| - | [[Category: Leulliot | + | [[Category: Leulliot N]] |
| - | [[Category: Liger | + | [[Category: Liger D]] |
| - | [[Category: Quevillon-Cheruel | + | [[Category: Quevillon-Cheruel S]] |
| - | [[Category: Sorel | + | [[Category: Sorel I]] |
| - | [[Category: Tilbeurgh | + | [[Category: Van Tilbeurgh H]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily.
| |||||||||||

