2dbo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2dbo" [edit=sysop:move=sysop])
Current revision (08:24, 25 October 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2dbo.png|left|200px]]
 
-
{{STRUCTURE_2dbo| PDB=2dbo | SCENE= }}
+
==Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus==
-
 
+
<StructureSection load='2dbo' size='340' side='right'caption='[[2dbo]], [[Resolution|resolution]] 2.76&Aring;' scene=''>
-
===Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2dbo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DBO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DBO FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.76&#8491;</td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dbo OCA], [https://pdbe.org/2dbo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dbo RCSB], [https://www.ebi.ac.uk/pdbsum/2dbo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dbo ProSAT], [https://www.topsan.org/Proteins/RSGI/2dbo TOPSAN]</span></td></tr>
-
[[2dbo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DBO OCA].
+
</table>
-
[[Category: Aquifex aeolicus]]
+
== Function ==
-
[[Category: Bessho, Y.]]
+
[https://www.uniprot.org/uniprot/DTD_AQUAE DTD_AQUAE] Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine (By similarity).
-
[[Category: Ishii, T.]]
+
== Evolutionary Conservation ==
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Shibata, R.]]
+
Check<jmol>
-
[[Category: Shirouzu, M.]]
+
<jmolCheckbox>
-
[[Category: Yokoyama, S.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/2dbo_consurf.spt"</scriptWhenChecked>
-
[[Category: D-amino acid]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: D-tyrosine]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Deacylase]]
+
</jmolCheckbox>
-
[[Category: Hydrolase]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dbo ConSurf].
-
[[Category: National project on protein structural and functional analyse]]
+
<div style="clear:both"></div>
-
[[Category: Nppsfa]]
+
__TOC__
-
[[Category: Riken structural genomics/proteomics initiative]]
+
</StructureSection>
-
[[Category: Rsgi]]
+
[[Category: Aquifex aeolicus VF5]]
-
[[Category: Structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: Trna]]
+
[[Category: Bessho Y]]
 +
[[Category: Ishii T]]
 +
[[Category: Shibata R]]
 +
[[Category: Shirouzu M]]
 +
[[Category: Yokoyama S]]

Current revision

Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus

PDB ID 2dbo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2dbo"
Personal tools