2dct

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:25, 25 October 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2dct.png|left|200px]]
 
-
{{STRUCTURE_2dct| PDB=2dct | SCENE= }}
+
==Crystal structure of the TT1209 from Thermus thermophilus HB8==
-
 
+
<StructureSection load='2dct' size='340' side='right'caption='[[2dct]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
-
===Crystal structure of the TT1209 from Thermus thermophilus HB8===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2dct]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DCT FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
[[2dct]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCT OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dct FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dct OCA], [https://pdbe.org/2dct PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dct RCSB], [https://www.ebi.ac.uk/pdbsum/2dct PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dct ProSAT], [https://www.topsan.org/Proteins/RSGI/2dct TOPSAN]</span></td></tr>
-
[[Category: Thermus thermophilus hb8]]
+
</table>
-
[[Category: Asada, Y.]]
+
== Function ==
-
[[Category: Kunishima, N.]]
+
[https://www.uniprot.org/uniprot/Q5SM39_THET8 Q5SM39_THET8]
-
[[Category: Nakamoto, T.]]
+
== Evolutionary Conservation ==
-
[[Category: Ono, N.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
Check<jmol>
-
[[Category: Shimada, H.]]
+
<jmolCheckbox>
-
[[Category: Shimizu, K.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dct_consurf.spt"</scriptWhenChecked>
-
[[Category: Sugahara, M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Yamamoto, H.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Riken structural genomics/proteomics initiative]]
+
</jmolCheckbox>
-
[[Category: Rsgi]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dct ConSurf].
-
[[Category: Structural genomic]]
+
<div style="clear:both"></div>
-
[[Category: Thermus thermophilus hb8]]
+
__TOC__
-
[[Category: Unknown function]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermus thermophilus HB8]]
 +
[[Category: Asada Y]]
 +
[[Category: Kunishima N]]
 +
[[Category: Nakamoto T]]
 +
[[Category: Ono N]]
 +
[[Category: Shimada H]]
 +
[[Category: Shimizu K]]
 +
[[Category: Sugahara M]]
 +
[[Category: Yamamoto H]]

Current revision

Crystal structure of the TT1209 from Thermus thermophilus HB8

PDB ID 2dct

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools