2ce6
From Proteopedia
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- | [[Image:2ce6.png|left|200px]] | ||
- | + | ==Structure of Helix Pomatia agglutinin with no ligands== | |
+ | <StructureSection load='2ce6' size='340' side='right'caption='[[2ce6]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[2ce6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helix_pomatia Helix pomatia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CE6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CE6 FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ce6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ce6 OCA], [https://pdbe.org/2ce6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ce6 RCSB], [https://www.ebi.ac.uk/pdbsum/2ce6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ce6 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q2F1K8_HELPO Q2F1K8_HELPO] | ||
+ | == Evolutionary Conservation == | ||
+ | [[Image:Consurf_key_small.gif|200px|right]] | ||
+ | Check<jmol> | ||
+ | <jmolCheckbox> | ||
+ | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ce/2ce6_consurf.spt"</scriptWhenChecked> | ||
+ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
+ | <text>to colour the structure by Evolutionary Conservation</text> | ||
+ | </jmolCheckbox> | ||
+ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ce6 ConSurf]. | ||
+ | <div style="clear:both"></div> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Helix pomatia agglutinin (HPA) is a N-acetylgalactosamine (GalNAc) binding lectin found in the albumen gland of the roman snail. As a constituent of perivitelline fluid, HPA protects fertilized eggs from bacteria and is part of the innate immunity system of the snail. The peptide sequence deduced from gene cloning demonstrates that HPA belongs to a family of carbohydrate-binding proteins recently identified in several invertebrates. This domain is also present in discoidin from the slime mold Dictyostelium discoideum. Investigation of the lectin specificity was performed with the use of glycan arrays, demonstrating that several GalNAc-containing oligosaccharides are bound and rationalizing the use of this lectin as a cancer marker. Titration microcalorimetry performed on the interaction between HPA and GalNAc indicates an affinity in the 10(-4) M range with an enthalpy-driven binding mechanism. The crystal structure of HPA demonstrates the occurrence of a new beta-sandwich lectin fold. The hexameric quaternary state was never observed previously for a lectin. The high resolution structure complex of HPA with GalNAc characterizes a new carbohydrate binding site and rationalizes the observed preference for alphaGalNAc-containing oligosaccharides. | ||
- | + | Biochemical and structural analysis of Helix pomatia agglutinin. A hexameric lectin with a novel fold.,Sanchez JF, Lescar J, Chazalet V, Audfray A, Gagnon J, Alvarez R, Breton C, Imberty A, Mitchell EP J Biol Chem. 2006 Jul 21;281(29):20171-80. Epub 2006 May 16. PMID:16704980<ref>PMID:16704980</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
+ | </div> | ||
+ | <div class="pdbe-citations 2ce6" style="background-color:#fffaf0;"></div> | ||
- | == | + | ==See Also== |
- | [[ | + | *[[Agglutinin 3D structures|Agglutinin 3D structures]] |
- | + | == References == | |
- | == | + | <references/> |
- | < | + | __TOC__ |
- | + | </StructureSection> | |
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[[Category: Helix pomatia]] | [[Category: Helix pomatia]] | ||
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: | + | [[Category: Audfray A]] |
+ | [[Category: Breton C]] | ||
+ | [[Category: Chazalet V]] | ||
+ | [[Category: Gagnon J]] | ||
+ | [[Category: Gautier C]] | ||
+ | [[Category: Imberty A]] | ||
+ | [[Category: Lescar J]] | ||
+ | [[Category: Mitchell EP]] | ||
+ | [[Category: Sanchez J-F]] |
Current revision
Structure of Helix Pomatia agglutinin with no ligands
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Categories: Helix pomatia | Large Structures | Audfray A | Breton C | Chazalet V | Gagnon J | Gautier C | Imberty A | Lescar J | Mitchell EP | Sanchez J-F