This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1vkc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:04, 28 December 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1vkc.jpg|left|200px]]<br /><applet load="1vkc" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1vkc, resolution 1.89&Aring;" />
 
-
'''Putative acetyl transferase from Pyrococcus furiosus'''<br />
 
-
==About this Structure==
+
==Putative acetyl transferase from Pyrococcus furiosus==
-
1VKC is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus] with <scene name='pdbligand=IOD:'>IOD</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VKC OCA].
+
<StructureSection load='1vkc' size='340' side='right'caption='[[1vkc]], [[Resolution|resolution]] 1.89&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1vkc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VKC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VKC FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.89&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vkc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vkc OCA], [https://pdbe.org/1vkc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vkc RCSB], [https://www.ebi.ac.uk/pdbsum/1vkc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vkc ProSAT], [https://www.topsan.org/Proteins/SECSG/1vkc TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8U4Q2_PYRFU Q8U4Q2_PYRFU]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/1vkc_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vkc ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pyrococcus furiosus]]
[[Category: Pyrococcus furiosus]]
-
[[Category: Single protein]]
+
[[Category: Adams MWW]]
-
[[Category: Adams, M W.W.]]
+
[[Category: Brereton PS]]
-
[[Category: Brereton, P S.]]
+
[[Category: Habel JE]]
-
[[Category: Habel, J E.]]
+
[[Category: Izumi M]]
-
[[Category: II, F L.Poole.]]
+
[[Category: Jenney Jr FE]]
-
[[Category: Izumi, M.]]
+
[[Category: Liu Z-J]]
-
[[Category: Jr, F E.Jenney.]]
+
[[Category: Poole II FL]]
-
[[Category: Liu, Z J.]]
+
[[Category: Richardson DC]]
-
[[Category: Richardson, D C.]]
+
[[Category: Richardson JS]]
-
[[Category: Richardson, J S.]]
+
[[Category: Rose JP]]
-
[[Category: Rose, J P.]]
+
[[Category: Shah C]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Sugar FJ]]
-
[[Category: Shah, C.]]
+
[[Category: Tempel W]]
-
[[Category: Sugar, F J.]]
+
[[Category: Wang B-C]]
-
[[Category: Tempel, W.]]
+
-
[[Category: Wang, B C.]]
+
-
[[Category: IOD]]
+
-
[[Category: acetyl transferase]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: pyrococcus furiosus]]
+
-
[[Category: secsg]]
+
-
[[Category: southeast collaboratory for structural genomics]]
+
-
[[Category: structural genomics]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:36:13 2008''
+

Current revision

Putative acetyl transferase from Pyrococcus furiosus

PDB ID 1vkc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools