2opc
From Proteopedia
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| - | [[Image:2opc.png|left|200px]]  | ||
| - | + | ==Structure of Melampsora lini avirulence protein, AvrL567-A==  | |
| + | <StructureSection load='2opc' size='340' side='right'caption='[[2opc]], [[Resolution|resolution]] 1.43Å' scene=''>  | ||
| + | == Structural highlights ==  | ||
| + | <table><tr><td colspan='2'>[[2opc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Melampsora_lini Melampsora lini]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OPC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OPC FirstGlance]. <br>  | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.43Å</td></tr>  | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>  | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2opc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2opc OCA], [https://pdbe.org/2opc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2opc RCSB], [https://www.ebi.ac.uk/pdbsum/2opc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2opc ProSAT]</span></td></tr>  | ||
| + | </table>  | ||
| + | == Function ==  | ||
| + | [https://www.uniprot.org/uniprot/Q6R661_MELLI Q6R661_MELLI]   | ||
| + | == Evolutionary Conservation ==  | ||
| + | [[Image:Consurf_key_small.gif|200px|right]]  | ||
| + | Check<jmol>  | ||
| + |   <jmolCheckbox>  | ||
| + |     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/op/2opc_consurf.spt"</scriptWhenChecked>  | ||
| + |     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>  | ||
| + |     <text>to colour the structure by Evolutionary Conservation</text>  | ||
| + |   </jmolCheckbox>  | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2opc ConSurf].  | ||
| + | <div style="clear:both"></div>  | ||
| + | <div style="background-color:#fffaf0;">  | ||
| + | == Publication Abstract from PubMed ==  | ||
| + | Metal-binding sites are ubiquitous in proteins and can be readily utilized for phasing. It is shown that a protein crystal structure can be solved using single-wavelength anomalous diffraction based on the anomalous signal of a cobalt ion measured on a conventional monochromatic X-ray source. The unique absorption edge of cobalt (1.61 A) is compatible with the Cu K alpha wavelength (1.54 A) commonly available in macromolecular crystallography laboratories. This approach was applied to the determination of the structure of Melampsora lini avirulence protein AvrL567-A, a protein with a novel fold from the fungal pathogen flax rust that induces plant disease resistance in flax plants. This approach using cobalt ions may be applicable to all cobalt-binding proteins and may be advantageous when synchrotron radiation is not readily available.  | ||
| - | + | The use of Co2+ for crystallization and structure determination, using a conventional monochromatic X-ray source, of flax rust avirulence protein.,Guncar G, Wang CI, Forwood JK, Teh T, Catanzariti AM, Ellis JG, Dodds PN, Kobe B Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Mar 1;63(Pt, 3):209-13. Epub 2007 Feb 23. PMID:17329816<ref>PMID:17329816</ref>  | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>  | |
| - | + | </div>  | |
| - | + | <div class="pdbe-citations 2opc" style="background-color:#fffaf0;"></div>  | |
| - | + | == References ==  | |
| - | + | <references/>  | |
| - | + | __TOC__  | |
| - | <  | + | </StructureSection>  | 
| + | [[Category: Large Structures]]  | ||
[[Category: Melampsora lini]]  | [[Category: Melampsora lini]]  | ||
| - | [[Category: Catanzariti  | + | [[Category: Catanzariti AM]]  | 
| - | [[Category: Dodds  | + | [[Category: Dodds PN]]  | 
| - | [[Category: Ellis  | + | [[Category: Ellis JG]]  | 
| - | [[Category: Forwood  | + | [[Category: Forwood JK]]  | 
| - | [[Category: Guncar  | + | [[Category: Guncar G]]  | 
| - | [[Category: Kobe  | + | [[Category: Kobe B]]  | 
| - | [[Category: Teh  | + | [[Category: Teh T]]  | 
| - | [[Category: Wang  | + | [[Category: Wang CI]]  | 
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Current revision
Structure of Melampsora lini avirulence protein, AvrL567-A
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Categories: Large Structures | Melampsora lini | Catanzariti AM | Dodds PN | Ellis JG | Forwood JK | Guncar G | Kobe B | Teh T | Wang CI

