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2gf7

From Proteopedia

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[[Image:2gf7.png|left|200px]]
 
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{{STRUCTURE_2gf7| PDB=2gf7 | SCENE= }}
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==Double tudor domain structure==
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<StructureSection load='2gf7' size='340' side='right'caption='[[2gf7]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2gf7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GF7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GF7 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gf7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gf7 OCA], [https://pdbe.org/2gf7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gf7 RCSB], [https://www.ebi.ac.uk/pdbsum/2gf7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gf7 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/KDM4A_HUMAN KDM4A_HUMAN] Histone demethylase that specifically demethylates 'Lys-9' and 'Lys-36' residues of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27' nor H4 'Lys-20'. Demethylates trimethylated H3 'Lys-9' and H3 'Lys-36' residue, while it has no activity on mono- and dimethylated residues. Demethylation of Lys residue generates formaldehyde and succinate. Participates in transcriptional repression of ASCL2 and E2F-responsive promoters via the recruitment of histone deacetylases and NCOR1, respectively.<ref>PMID:16024779</ref> <ref>PMID:16603238</ref> <ref>PMID:21694756</ref> Isoform 2: Crucial for muscle differentiation, promotes transcriptional activation of the Myog gene by directing the removal of repressive chromatin marks at its promoter. Lacks the N-terminal demethylase domain.<ref>PMID:16024779</ref> <ref>PMID:16603238</ref> <ref>PMID:21694756</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/2gf7_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gf7 ConSurf].
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<div style="clear:both"></div>
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===Double tudor domain structure===
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==See Also==
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*[[Jumonji domain-containing protein 3D structures|Jumonji domain-containing protein 3D structures]]
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{{ABSTRACT_PUBMED_16601153}}
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== References ==
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<references/>
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==About this Structure==
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__TOC__
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[[2gf7]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GF7 OCA].
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</StructureSection>
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==Reference==
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<ref group="xtra">PMID:016601153</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Bedford, M T.]]
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[[Category: Large Structures]]
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[[Category: Fang, J.]]
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[[Category: Bedford MT]]
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[[Category: Huang, Y.]]
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[[Category: Fang J]]
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[[Category: Xu, R M.]]
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[[Category: Huang Y]]
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[[Category: Zhang, Y.]]
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[[Category: Xu RM]]
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[[Category: Double tudor domain]]
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[[Category: Zhang Y]]
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[[Category: Jmjc domain containing]]
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[[Category: Metal binding protein]]
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[[Category: Trimethyl hisone demethylase]]
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[[Category: Trimethyl histone h3 lysine 4]]
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[[Category: Tudor tandem]]
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Current revision

Double tudor domain structure

PDB ID 2gf7

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