This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2i14

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2i14" [edit=sysop:move=sysop])
Current revision (10:04, 30 August 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2i14.png|left|200px]]
 
-
{{STRUCTURE_2i14| PDB=2i14 | SCENE= }}
+
==Crystal structure of nicotinate-nucleotide pyrophosphorylase from Pyrococcus furiosus==
-
 
+
<StructureSection load='2i14' size='340' side='right'caption='[[2i14]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
===Crystal structure of nicotinate-nucleotide pyrophosphorylase from Pyrococcus furiosus===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2i14]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I14 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I14 FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCP:1-ALPHA-PYROPHOSPHORYL-2-ALPHA,3-ALPHA-DIHYDROXY-4-BETA-CYCLOPENTANE-METHANOL-5-PHOSPHATE'>PCP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[2i14]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I14 OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i14 OCA], [https://pdbe.org/2i14 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i14 RCSB], [https://www.ebi.ac.uk/pdbsum/2i14 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i14 ProSAT], [https://www.topsan.org/Proteins/BSGC/2i14 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8TZS9_PYRFU Q8TZS9_PYRFU]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i1/2i14_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i14 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pyrococcus furiosus]]
[[Category: Pyrococcus furiosus]]
-
[[Category: BSGC, Berkeley Structural Genomics Center.]]
+
[[Category: Kim R]]
-
[[Category: Kim, R.]]
+
[[Category: Kim S-H]]
-
[[Category: Kim, S H.]]
+
[[Category: Shin DH]]
-
[[Category: Shin, D H.]]
+
-
[[Category: Berkeley structural genomics center]]
+
-
[[Category: Bsgc]]
+
-
[[Category: Ligand binding]]
+
-
[[Category: Nicotinate-nucleotide pyrophosphorylase]]
+
-
[[Category: Phosphoribosylpyrophosphate]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transferase]]
+
-
[[Category: Zn metal ion]]
+

Current revision

Crystal structure of nicotinate-nucleotide pyrophosphorylase from Pyrococcus furiosus

PDB ID 2i14

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools