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2ppx
From Proteopedia
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| - | [[Image:2ppx.png|left|200px]] | ||
| - | + | ==Crystal structure of a HTH XRE-family like protein from Agrobacterium tumefaciens== | |
| - | + | <StructureSection load='2ppx' size='340' side='right'caption='[[2ppx]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2ppx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrfc Agrfc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PPX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PPX FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | == | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[2ppx]] is a 1 chain structure with sequence from [ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Atu1735, AGR_C_3184 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRFC])</td></tr> |
| - | [[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ppx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ppx OCA], [https://pdbe.org/2ppx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ppx RCSB], [https://www.ebi.ac.uk/pdbsum/2ppx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ppx ProSAT], [https://www.topsan.org/Proteins/MCSG/2ppx TOPSAN]</span></td></tr> |
| - | [[Category: Cuff, M E | + | </table> |
| - | [[Category: Edwards, A | + | == Evolutionary Conservation == |
| - | [[Category: Joachimiak, A | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: Onopriyenko, O | + | <jmolCheckbox> |
| - | [[Category: Savchenko, A | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/2ppx_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Skarina, T | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ppx ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Agrfc]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Cuff, M E]] | ||
| + | [[Category: Edwards, A]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Onopriyenko, O]] | ||
| + | [[Category: Savchenko, A]] | ||
| + | [[Category: Skarina, T]] | ||
[[Category: Agrobacterium tumefacien]] | [[Category: Agrobacterium tumefacien]] | ||
[[Category: Hth-motif]] | [[Category: Hth-motif]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
[[Category: Xre-family]] | [[Category: Xre-family]] | ||
Current revision
Crystal structure of a HTH XRE-family like protein from Agrobacterium tumefaciens
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