This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2o7q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:15, 28 December 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2o7q.png|left|200px]]
 
-
{{STRUCTURE_2o7q| PDB=2o7q | SCENE= }}
+
==Crystal Structure of the A. thaliana DHQ-dehydroshikimate-SDH-shikimate-NADP(H)==
-
 
+
<StructureSection load='2o7q' size='340' side='right'caption='[[2o7q]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
===Crystal Structure of the A. thaliana DHQ-dehydroshikimate-SDH-shikimate-NADP(H)===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2o7q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O7Q FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=DHK:3-DEHYDROSHIKIMATE'>DHK</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[2o7q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7Q OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7q OCA], [https://pdbe.org/2o7q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o7q RCSB], [https://www.ebi.ac.uk/pdbsum/2o7q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o7q ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DHQSD_ARATH DHQSD_ARATH]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/2o7q_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o7q ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
-
[[Category: Christendat, D.]]
+
[[Category: Large Structures]]
-
[[Category: Singh, S A.]]
+
[[Category: Christendat D]]
-
[[Category: Bifunctional enzyme]]
+
[[Category: Singh SA]]
-
[[Category: Dehydroshikimate]]
+
-
[[Category: Nadph]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Shikimate]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal Structure of the A. thaliana DHQ-dehydroshikimate-SDH-shikimate-NADP(H)

PDB ID 2o7q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools