This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2gpj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2gpj" [edit=sysop:move=sysop])
Current revision (06:45, 25 January 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2gpj.png|left|200px]]
 
-
{{STRUCTURE_2gpj| PDB=2gpj | SCENE= }}
+
==CRYSTAL STRUCTURE OF A SIDEROPHORE-INTERACTING PROTEIN (SPUTCN32_0076) FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A RESOLUTION==
-
 
+
<StructureSection load='2gpj' size='340' side='right'caption='[[2gpj]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
===CRYSTAL STRUCTURE OF A SIDEROPHORE-INTERACTING PROTEIN (SPUTCN32_0076) FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A RESOLUTION===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2gpj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_putrefaciens_CN-32 Shewanella putrefaciens CN-32]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GPJ FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpj OCA], [https://pdbe.org/2gpj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gpj RCSB], [https://www.ebi.ac.uk/pdbsum/2gpj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gpj ProSAT], [https://www.topsan.org/Proteins/JCSG/2gpj TOPSAN]</span></td></tr>
-
[[2gpj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_putrefaciens Shewanella putrefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA].
+
</table>
-
[[Category: Shewanella putrefaciens]]
+
== Function ==
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[https://www.uniprot.org/uniprot/A4Y1H9_SHEPC A4Y1H9_SHEPC]
-
[[Category: Fad-binding protein]]
+
== Evolutionary Conservation ==
-
[[Category: Jcsg]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Joint center for structural genomic]]
+
Check<jmol>
-
[[Category: Protein structure initiative]]
+
<jmolCheckbox>
-
[[Category: Psi-2]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/2gpj_consurf.spt"</scriptWhenChecked>
-
[[Category: Siderophore-interacting protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Structural genomic]]
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gpj ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Shewanella putrefaciens CN-32]]

Current revision

CRYSTAL STRUCTURE OF A SIDEROPHORE-INTERACTING PROTEIN (SPUTCN32_0076) FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A RESOLUTION

PDB ID 2gpj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools