This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2ksv
From Proteopedia
(Difference between revisions)
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2ksv.png|left|200px]] | ||
| - | + | ==The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum== | |
| + | <StructureSection load='2ksv' size='340' side='right'caption='[[2ksv]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2ksv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"chryseobacterium_proteolyticum"_yamaguchi_and_yokoe_2000 "chryseobacterium proteolyticum" yamaguchi and yokoe 2000]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KSV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KSV FirstGlance]. <br> | ||
| + | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">prgA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=118127 "Chryseobacterium proteolyticum" Yamaguchi and Yokoe 2000])</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Protein-glutamine_glutaminase Protein-glutamine glutaminase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.44 3.5.1.44] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ksv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ksv OCA], [https://pdbe.org/2ksv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ksv RCSB], [https://www.ebi.ac.uk/pdbsum/2ksv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ksv ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/2ksv_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ksv ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | == | + | ==See Also== |
| - | + | *[[Glutaminase 3D structures|Glutaminase 3D structures]] | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | [[ | + | [[Category: Chryseobacterium proteolyticum yamaguchi and yokoe 2000]] |
| - | + | [[Category: Large Structures]] | |
| - | + | ||
| - | + | ||
| - | [[Category: Chryseobacterium proteolyticum]] | + | |
[[Category: Protein-glutamine glutaminase]] | [[Category: Protein-glutamine glutaminase]] | ||
| - | [[Category: Inagaki, F | + | [[Category: Inagaki, F]] |
| - | [[Category: Kai, Y | + | [[Category: Kai, Y]] |
| - | [[Category: Kumeta, H | + | [[Category: Kumeta, H]] |
| - | [[Category: Miwa, N | + | [[Category: Miwa, N]] |
| - | [[Category: Mizukoshi, T | + | [[Category: Mizukoshi, T]] |
| - | [[Category: Ogura, K | + | [[Category: Ogura, K]] |
| - | [[Category: Shimba, N | + | [[Category: Shimba, N]] |
| - | [[Category: Suzuki, E | + | [[Category: Suzuki, E]] |
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
Current revision
The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum
| |||||||||||

