2o6d
From Proteopedia
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| - | [[Image:2o6d.png|left|200px]] | ||
| - | + | ==Structure of native rTp34 from Treponema pallidum== | |
| - | + | <StructureSection load='2o6d' size='340' side='right'caption='[[2o6d]], [[Resolution|resolution]] 1.86Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2o6d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Treponema_pallidum Treponema pallidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O6D FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o6d OCA], [https://pdbe.org/2o6d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o6d RCSB], [https://www.ebi.ac.uk/pdbsum/2o6d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o6d ProSAT]</span></td></tr> |
| - | [[2o6d]] is a 2 chain structure with sequence from [ | + | </table> |
| - | + | == Function == | |
| - | == | + | [https://www.uniprot.org/uniprot/TA34_TREPA TA34_TREPA] This antigen is a pathogen-specific membrane immunogen. |
| - | < | + | == Evolutionary Conservation == |
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o6/2o6d_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o6d ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Treponema pallidum]] | [[Category: Treponema pallidum]] | ||
| - | [[Category: Brautigam | + | [[Category: Brautigam CA]] |
| - | [[Category: Deka | + | [[Category: Deka RK]] |
| - | [[Category: Lumpkins | + | [[Category: Lumpkins SB]] |
| - | [[Category: Machius | + | [[Category: Machius M]] |
| - | [[Category: Norgard | + | [[Category: Norgard MV]] |
| - | [[Category: Tomchick | + | [[Category: Tomchick DR]] |
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Current revision
Structure of native rTp34 from Treponema pallidum
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