2h5y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:50, 25 October 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2h5y.png|left|200px]]
 
-
{{STRUCTURE_2h5y| PDB=2h5y | SCENE= }}
+
==Crystallographic structure of the Molybdate-Binding Protein of Xanthomonas citri at 1.7 Ang resolution bound to molybdate==
 +
<StructureSection load='2h5y' size='340' side='right'caption='[[2h5y]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2h5y]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_citri_pv._citri_str._306 Xanthomonas citri pv. citri str. 306]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2H5Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2H5Y FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MOO:MOLYBDATE+ION'>MOO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2h5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h5y OCA], [https://pdbe.org/2h5y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2h5y RCSB], [https://www.ebi.ac.uk/pdbsum/2h5y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2h5y ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MODA_XANAC MODA_XANAC] Part of the ABC transporter complex ModABC involved in the transport of molybdenum into the cell (Probable). Binds molybdate and tungstate with high affinity in vitro (PubMed:16879982).<ref>PMID:16879982</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h5/2h5y_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2h5y ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Xanthomonas axonopodis pv. citri ModA protein is the ABC periplasmic binding component responsible for the capture of molybdate. The protein was crystallized with sodium molybdate using the hanging-drop vapour-diffusion method in the presence of PEG or sulfate. X-ray diffraction data were collected to a maximum resolution of 1.7 A using synchrotron radiation. The crystal belongs to the orthorhombic space group C222(1), with unit-cell parameters a = 68.15, b = 172.14, c = 112.04 A. The crystal structure was solved by molecular-replacement methods and structure refinement is in progress.
-
===Crystallographic structure of the Molybdate-Binding Protein of Xanthomonas citri at 1.7 Ang resolution bound to molybdate===
+
Crystallization, data collection and phasing of the molybdate-binding protein of the phytopathogen Xanthomonas axonopodis pv. citri.,Santacruz CP, Balan A, Ferreira LC, Barbosa JA Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Mar 1;62(Pt, 3):289-91. Epub 2006 Feb 24. PMID:16511325<ref>PMID:16511325</ref>
-
{{ABSTRACT_PUBMED_16511325}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2h5y" style="background-color:#fffaf0;"></div>
-
==About this Structure==
+
==See Also==
-
[[2h5y]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanthomonas_axonopodis_pv._citri_str._306 Xanthomonas axonopodis pv. citri str. 306]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2H5Y OCA].
+
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:016511325</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Xanthomonas axonopodis pv. citri str. 306]]
+
</StructureSection>
-
[[Category: Balan, A.]]
+
[[Category: Large Structures]]
-
[[Category: Barbosa, J A.R G.]]
+
[[Category: Xanthomonas citri pv. citri str. 306]]
-
[[Category: Ferreira, L C.S.]]
+
[[Category: Balan A]]
-
[[Category: Santacruz, C P.]]
+
[[Category: Barbosa JARG]]
-
[[Category: Metal transport]]
+
[[Category: Ferreira LCS]]
-
[[Category: Moda]]
+
[[Category: Santacruz CP]]
-
[[Category: Molybdate-binding protein]]
+
-
[[Category: Xanthomonas axonopodis pv. citri]]
+

Current revision

Crystallographic structure of the Molybdate-Binding Protein of Xanthomonas citri at 1.7 Ang resolution bound to molybdate

PDB ID 2h5y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2h5y"
Personal tools