2o1m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:23, 17 October 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2o1m.png|left|200px]]
 
-
{{STRUCTURE_2o1m| PDB=2o1m | SCENE= }}
+
==Crystal structure of the probable amino-acid ABC transporter extracellular-binding protein ytmK from Bacillus subtilis. Northeast Structural Genomics Consortium target SR572==
-
 
+
<StructureSection load='2o1m' size='340' side='right'caption='[[2o1m]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
===Crystal structure of the probable amino-acid ABC transporter extracellular-binding protein ytmK from Bacillus subtilis. Northeast Structural Genomics Consortium target SR572===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2o1m]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O1M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O1M FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[2o1m]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O1M OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o1m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o1m OCA], [https://pdbe.org/2o1m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o1m RCSB], [https://www.ebi.ac.uk/pdbsum/2o1m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o1m ProSAT], [https://www.topsan.org/Proteins/NESGC/2o1m TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/TCYK_BACSU TCYK_BACSU] Part of the ABC transporter complex TcyJKLMN involved in L-cystine import. Is also involved in cystathionine, djenkolate, and S-methylcysteine transport.<ref>PMID:15262924</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o1/2o1m_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o1m ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
-
[[Category: Acton, T B.]]
+
[[Category: Large Structures]]
-
[[Category: Baran, M C.]]
+
[[Category: Acton TB]]
-
[[Category: Chen, C X.]]
+
[[Category: Baran MC]]
-
[[Category: Cunningham, K.]]
+
[[Category: Chen CX]]
-
[[Category: Fang, Y.]]
+
[[Category: Cunningham K]]
-
[[Category: Hunt, J F.]]
+
[[Category: Fang Y]]
-
[[Category: Kuzin, A P.]]
+
[[Category: Hunt JF]]
-
[[Category: Liu, J.]]
+
[[Category: Kuzin AP]]
-
[[Category: Ma, L C.]]
+
[[Category: Liu J]]
-
[[Category: Montelione, G.]]
+
[[Category: Ma LC]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Montelione G]]
-
[[Category: Rost, B.]]
+
[[Category: Rost B]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Seetharaman J]]
-
[[Category: Su, M.]]
+
[[Category: Su M]]
-
[[Category: Tong, L.]]
+
[[Category: Tong L]]
-
[[Category: Xiao, R.]]
+
[[Category: Xiao R]]
-
[[Category: Nesg]]
+
-
[[Category: Nesg x-ray o34852 ytmk_bacsu]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal structure of the probable amino-acid ABC transporter extracellular-binding protein ytmK from Bacillus subtilis. Northeast Structural Genomics Consortium target SR572

PDB ID 2o1m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2o1m"
Personal tools